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Items: 1 to 20 of 116

1.

Understanding microRNAs regulation in heat shock response in the sea cucumber Apostichopus japonicus

(Submitter supplied) In this study, we sought to determine the expression profiles of miRNAs under HS in A. japonicus by using HiSeq techinique. Nine miRNA libraries of sea cucumbers (Control: C1, C2, C3; HS 6h: 6h1, 6h2, 6h3; HS 48h: 48h1, 48h2, 48h3 ) were sequenced respectively. We highlighted differentially expressed miRNAs among HS groups, many of which were invovled of immunity process and disease regulation.
Organism:
Apostichopus japonicus
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL23583
9 Samples
Download data: FA, XLSX
Series
Accession:
GSE115076
ID:
200115076
2.

Integrated analysis of sea cucumber ambient temperature and dissolved oxygen responsive lncRNAs and mRNAs

(Submitter supplied) In this work, identification of differentially expressed (DE) genes, including lncRNAs and mRNAs, in sea cucumber response to multiple environmental stress, such as thermal, hypoxic and the combined treatment.
Organism:
Apostichopus japonicus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL25856
12 Samples
Download data: TXT
Series
Accession:
GSE131676
ID:
200131676
3.

Transcriptome landscape during tenderization in sea cucumber Apostichopus japonicus

(Submitter supplied) The gene expression profiles associated with tenderization in body wall of sea cucumber (Apostichopus japonicus) were determined
Organism:
Apostichopus japonicus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL25856
9 Samples
Download data: FA, TXT
Series
Accession:
GSE123077
ID:
200123077
4.

Differential expression of genes in the respiratory tree of sea cucumber (Apostichopus japonicus) under normal dissolved oxygen and hypoxia conditions

(Submitter supplied) The sea cucumber Apostichopus japonicus is a deposit-feeder and vital for marine benthic ecosystems. Hypoxia lasting for several days can lead to massive mortality in A. japonicus. It is important to understand the molecular responses of A. japonicus when exposed to acute changes in DO concentration. In the present study, RNA-seq provided a general overview of the gene expression profiles of the respiratory tree of A. more...
Organism:
Apostichopus japonicus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL23583
9 Samples
Download data: XLS
Series
Accession:
GSE100042
ID:
200100042
5.

Differential gene expression in the intestine of sea cucumber (Apostichopus japonicus) under low and high salinity conditions

(Submitter supplied) Sea cucumber, Apostichopus japonicus is a very important species for aquaculture, and its behavior and physiology can respond to the initial change in salinity. It is important to understand the molecular responses of A. japonicus when exposed to ambient changes in salinity In this study, RNA-seq provided a general overview of the gene expression profiles of the intestine of A. japonicus exposed to high salinity (SD40), normal salinity (SD30) and low salinity (SD20) environment.
Organism:
Apostichopus japonicus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL23583
9 Samples
Download data: FASTA, TXT
Series
Accession:
GSE103466
ID:
200103466
6.

High-throughput Sequencing Reveals Differential expression of MicroRNAs during intestine regeneration of sea cucumber Apostichopus japonicus

(Submitter supplied) We applied high-throughput sequencing to investigate the alterations of miRNAs expression in regenerative intestine (3dpeA, 3dpeB, 3dpeC) Vs normal intestine (ControlA, ControlB, ControlC).
Organism:
Apostichopus japonicus
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL16771
6 Samples
Download data: TXT
Series
Accession:
GSE87210
ID:
200087210
7.

High-Throughput Sequencing Reveals Differential Expression of miRNAs in respiratory tree from the sea cucumber Apostichopus japonicus Under Hypoxia Stress

(Submitter supplied) The present study identified and characterized miRNAs, which may play a major role in stress resistance. we applied high-throughput sequencing to investigate the alterations of miRNAs expression of sea cucumber under hypoxia stress(DO2_1,DO2_2,DO2_3),slight hypoxia stress(DO4_1,DO4_2,DO4_3) and normal condition(DO8_1,DO8_2,DO8_3). These results will provide a basis for future studies of miRNA regulation in sea cucumbers under hypoxia stress.
Organism:
Apostichopus japonicus
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL23638
9 Samples
Download data: XLSX
Series
Accession:
GSE100603
ID:
200100603
8.

Differential gene expression in the body wall of the sea cucumber (Apostichopus japonicus) under strong lighting and dark conditions

(Submitter supplied) RNA-seq provided a general overview of the gene expression profiles of the body walls of A. japonicus exposed to strong light (“light”), normal light (“control”) and fully dark (“dark”) environment.
Organism:
Apostichopus japonicus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL16771
3 Samples
Download data: TXT
Series
Accession:
GSE87803
ID:
200087803
9.

Gene expression profiles of the respiratory tree of sea cucumber Apostichopus japonicus during aestivation by RNA-seq

(Submitter supplied) Sea cucumbers (Holothuroidea; Echinodermata) cycle annually between aestivation, when water temperature is above about 25°C in the summer, and active life, when temperature is below about 18°C. We used RNA-Seq to determine gene expression profiles of respiratory tree tissue of A. japonicus during non-aestivation (NA), deep-aestivation (DA), and arousal from aestivation (AA).
Organism:
Apostichopus japonicus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL16771
3 Samples
Download data: TXT
Series
Accession:
GSE53815
ID:
200053815
10.

RNA-Seq dependent transcriptional analysis unveils adaptive mechanisms in the intestine of sea cucumber Apostichopus japonicus during aestivation

(Submitter supplied) Sea cucumbers (Holothuroidea; Echinodermata), cycle annually between aestivation when water temperature is above about 25°C in the summer and active life when temperature is below about 18°C. We used RNA-Seq to determine gene expression profiles of intestine tissue of A.japonicus during non-aestivation (NA), deep-aestivation (DA), and arousal from aestivation (AA).
Organism:
Apostichopus japonicus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL16771
3 Samples
Download data: TXT
Series
Accession:
GSE51137
ID:
200051137
11.

NA-Seq reveals dynamic changes of gene expression in key stages of intestine regeneration in the sea cucumber Apostichopus japonicus.

(Submitter supplied) Sea cucumbers (Holothuroidea; Echinodermata) have the capacity to regenerate lost tissues and organs.We used RNA-Seq to determine gene expression profiles associated with intestinal regeneration in A. japonicus at 3, 7, 14 and 21 days post evisceration (dpe)
Organism:
Apostichopus japonicus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL16771
5 Samples
Download data: FNA, TXT
Series
Accession:
GSE44995
ID:
200044995
12.

Large-scale identification and comparative analysis of miRNA expression profile in the respiratory tree of the sea cucumber Apostichopus japonicus during aestivation

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Apostichopus japonicus
Type:
Non-coding RNA profiling by array; Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL16771 GPL17445
8 Samples
Download data: TXT
Series
Accession:
GSE52226
ID:
200052226
13.

Large-scale identification and comparative analysis of miRNA expression profile in the respiratory tree of the sea cucumber Apostichopus japonicus during aestivation (part 2)

(Submitter supplied) The sea cucumber Apostichopus japonicus withstands high water temperatures in the summer by suppressing metabolic rate and entering a state of aestivation. We hypothesized that changes in the expression of miRNAs could provide important post-transcriptional regulation of gene expression during hypometabolism via control over mRNA translation. The present study analyzed profiles of miRNA expression in the sea cucumber respiratory tree using Solexa deep sequencing technology. more...
Organism:
Apostichopus japonicus
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL16771
2 Samples
Download data: TXT
Series
Accession:
GSE52225
ID:
200052225
14.

Large-scale identification and comparative analysis of miRNA expression profile in the respiratory tree of the sea cucumber Apostichopus japonicus during aestivation (part 1)

(Submitter supplied) The sea cucumber Apostichopus japonicus withstands high water temperatures in the summer by suppressing metabolic rate and entering a state of aestivation. We hypothesized that changes in the expression of miRNAs could provide important post-transcriptional regulation of gene expression during hypometabolism via control over mRNA translation. The present study analyzed profiles of miRNA expression in the sea cucumber respiratory tree using Solexa deep sequencing technology. more...
Organism:
Apostichopus japonicus
Type:
Non-coding RNA profiling by array
Platform:
GPL17445
6 Samples
Download data: TXT
Series
Accession:
GSE52224
ID:
200052224
15.

High-throughput sequencing reveals differential expression of miRNAs in intestine from sea cucumber during aestivation

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Apostichopus japonicus
Type:
Non-coding RNA profiling by high throughput sequencing; Non-coding RNA profiling by array
Platforms:
GPL16771 GPL17445
8 Samples
Download data: TXT
Series
Accession:
GSE48869
ID:
200048869
16.

High-throughput sequencing reveals differential expression of miRNAs in intestine from sea cucumber during aestivation [microarray]

(Submitter supplied) The regulatory role of miRNA in gene expression is an emerging hot new topic in the control of hypometabolism. Sea cucumber aestivation is a complicated physiological process that includes obvious hypometabolism as evidenced by a decrease in the rates of oxygen consumption and ammonia nitrogen excretion, as well as a serious degeneration of the intestine into a very tiny filament. To determine whether miRNAs play an important regulatory roles in this process, the present study analyzed profiles of miRNA expression in the intestine of sea cucumber (Apostichopus japonicus), using Solexa deep sequencing technology. more...
Organism:
Apostichopus japonicus
Type:
Non-coding RNA profiling by array
Platform:
GPL17445
6 Samples
Download data: TXT
Series
Accession:
GSE48868
ID:
200048868
17.

High-throughput sequencing reveals differential expression of miRNAs in intestine from sea cucumber during aestivation [miRNA-Seq]

(Submitter supplied) The regulatory role of miRNA in gene expression is an emerging hot new topic in the control of hypometabolism. Sea cucumber aestivation is a complicated physiological process that includes obvious hypometabolism as evidenced by a decrease in the rates of oxygen consumption and ammonia nitrogen excretion, as well as a serious degeneration of the intestine into a very tiny filament. To determine whether miRNAs play an important regulatory roles in this process, the present study analyzed profiles of miRNA expression in the intestine of sea cucumber (Apostichopus japonicus), using Solexa deep sequencing technology. more...
Organism:
Apostichopus japonicus
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL16771
2 Samples
Download data: TXT
Series
Accession:
GSE48867
ID:
200048867
18.

HiSeq X Ten (Apostichopus japonicus)

Organism:
Apostichopus japonicus
Download data
Platform
Accession:
GPL30874
ID:
100030874
19.

Illumina HiSeq 4000 (Apostichopus japonicus)

Organism:
Apostichopus japonicus
2 Series
21 Samples
Download data
Platform
Accession:
GPL25856
ID:
100025856
20.

Illumina HiSeq 2500 (Apostichopus japonicus)

Organism:
Apostichopus japonicus
1 Series
9 Samples
Download data
Platform
Accession:
GPL23638
ID:
100023638
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