gene

print a summary of a gene dataset

Name

datasets summary gene - print a summary of a gene dataset

Description

Print a summary of a gene dataset by NCBI Gene ID, gene symbol or RefSeq nucleotide or protein accession. The summary is returned in JSON format.

Refer to NCBI’s command line quickstart documentation for information about getting started with the command-line tools.

Examples

  datasets summary gene gene-id 672
  datasets summary gene symbol brca1 --taxon mouse
  datasets summary gene accession NP_000483.3

Options

      --api-key string   NCBI Datasets API Key
      --as-json-lines    Stream results as newline delimited JSON-Lines
  -h, --help             help for gene
      --no-progressbar   hide progress bar

Fields

MnemonicName
annotation-assemblies-in-scope-accessionAnnotation Assemblies in Scope Accession
annotation-assemblies-in-scope-nameAnnotation Assemblies in Scope Name
annotation-release-dateAnnotation Release Date
annotation-release-nameAnnotation Release Name
chromosomesChromosomes
common-nameCommon Name
descriptionDescription
ensembl-geneidsEnsembl GeneIDs
gene-idNCBI GeneID
gene-typeGene Type
genomic-range-accessionGenomic Range Sequence Accession
genomic-range-range-orientationGenomic Range Orientation
genomic-range-range-startGenomic Range Start
genomic-range-range-stopGenomic Range Stop
genomic-region-gene-range-accessionGenomic Region Gene Range Sequence Accession
genomic-region-gene-range-range-orientationGenomic Region Gene Range Orientation
genomic-region-gene-range-range-startGenomic Region Gene Range Start
genomic-region-gene-range-range-stopGenomic Region Gene Range Stop
genomic-region-genomic-region-typeGenomic Region Genomic Region Type
name-authorityNomenclature Authority
name-idNomenclature ID
omim-idsOMIM IDs
orientationOrientation
protein-accessionProtein Accession
protein-ensembl-proteinProtein Ensembl Protein
protein-isoformProtein Isoform
protein-lengthProtein Length
protein-mat-peptide-accessionProtein Mature Peptide Accession
protein-mat-peptide-lengthProtein Mature Peptide Length
protein-mat-peptide-nameProtein Mature Peptide Name
protein-nameProtein Name
ref-standard-gene-range-accessionReference Standard Gene Range Sequence Accession
ref-standard-gene-range-range-orientationReference Standard Gene Range Orientation
ref-standard-gene-range-range-startReference Standard Gene Range Start
ref-standard-gene-range-range-stopReference Standard Gene Range Stop
ref-standard-genomic-region-typeReference Standard Genomic Region Type
replaced-gene-idReplaced NCBI GeneID
rna-typeRNA Type
swissprot-accessionsSwissProt Accessions
symbolSymbol
synonymsSynonyms
tax-idTaxonomic ID
tax-nameTaxonomic Name
transcript-accessionTranscript Accession
transcript-cds-accessionTranscript CDS Sequence Accession
transcript-cds-range-orientationTranscript CDS Orientation
transcript-cds-range-startTranscript CDS Start
transcript-cds-range-stopTranscript CDS Stop
transcript-ensembl-transcriptTranscript Ensembl Transcript
transcript-genomic-location-accessionTranscript Genomic Accession
transcript-genomic-location-exon-orientationTranscript Genomic Exons Orientation
transcript-genomic-location-exon-startTranscript Genomic Exons Start
transcript-genomic-location-exon-stopTranscript Genomic Exons Stop
transcript-genomic-location-range-orientationTranscript Genomic Orientation
transcript-genomic-location-range-startTranscript Genomic Start
transcript-genomic-location-range-stopTranscript Genomic Stop
transcript-genomic-location-seq-nameTranscript Genomic Seq Name
transcript-lengthTranscript Transcript Length
transcript-nameTranscript Transcript Name
transcript-protein-accessionTranscript Protein Accession
transcript-protein-ensembl-proteinTranscript Protein Ensembl Protein
transcript-protein-isoformTranscript Protein Isoform
transcript-protein-lengthTranscript Protein Length
transcript-protein-mat-peptide-accessionTranscript Protein Mature Peptide Accession
transcript-protein-mat-peptide-lengthTranscript Protein Mature Peptide Length
transcript-protein-mat-peptide-nameTranscript Protein Mature Peptide Name
transcript-protein-nameTranscript Protein Name
transcript-transcript-typeTranscript Type

Commands


gene-id

print a summary of a gene dataset by NCBI Gene ID

symbol

print a summary of a gene dataset by gene symbol

accession

print a summary of a gene dataset by RefSeq nucleotide or protein accession

taxon

print a summary of a gene dataset by taxon

Generated October 22, 2021