prok-gene

Convert Prokaryote Gene Report into TSV format

prok-gene

Convert Prokaryote Gene Report into TSV format

Name

dataformat tsv prok-gene - Convert Prokaryote Gene Report into TSV format

Synopsis

dataformat tsv prok-gene [flags]

Description

Convert Prokaryote Gene Report into TSV format.

Refer to NCBI’s command line start documentation for information about getting started with the command-line tools.

Examples

  dataformat tsv prok-gene --inputfile prokaryote_package/ncbi_dataset/data/data_report.jsonl
  dataformat tsv prok-gene --package prokaryote-package.zip

Options

      --elide-header       Do not output header
      --fields strings     comma-separated list of fields
  -h, --help               help for prok-gene
      --inputfile string   input file
      --package string     datasets package (zip archive), inputfile parameter is relative to the root path inside the archive

Fields

MnemonicName
accessionAccession
descriptionDescription
ec-numberEC Number
gene-symbolGene Symbol
mapping-countNumber of Genome Mappings
name-evidence-accessionProtein Name EvidenceAccession
name-evidence-categoryProtein Name EvidenceCategory
name-evidence-sourceProtein Name EvidenceSource
protein-lengthProtein Length
protein-nameProtein Name
Generated November 19, 2021