genome-seq

Convert Genome Assembly Sequence Report into an Excel workbook

genome-seq

Convert Genome Assembly Sequence Report into an Excel workbook

Name

dataformat excel genome-seq - Convert Genome Assembly Sequence Report into an Excel workbook

Synopsis

dataformat excel genome-seq [flags]

Description

Convert Genome Assembly Sequence Report into an Excel workbook.

Refer to NCBI’s command line start documentation for information about getting started with the command-line tools.

Examples

  dataformat excel genome-seq --inputfile human_package/ncbi_dataset/data/GCF_000001405.39/sequence_report.jsonl --outputfile human-ref-genome-seq.xlsx
  dataformat excel genome-seq --package human.zip --inputfile GCF_000001405.39/sequence_report.jsonl --outputfile human-ref-genome-seq.xlsx

Options

      --fields strings      comma-separated list of fields
  -h, --help                help for genome-seq
      --inputfile string    input file
  -o, --outputfile string   Excel workbook file
      --package string      datasets package (zip archive), inputfile parameter is relative to the root path inside the archive

Fields

MnemonicName
assm-unit-accAssembly-unit accession
chr-nameChromosome name
gc-countGC Count
genbank-seq-accGenBank seq accession
mol-typeMolecule type
orderingOrdering
refseq-seq-accRefSeq seq accession
seq-lengthSeq length
ucsc-style-nameUCSC style name
Generated October 14, 2021