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Australian marsupial phylogenetic study. Bioplatforms Australia and Oz Mammals Genomics.

Identifiers
BioSample: SAMEA7321336; SRA: ERS5079871
Organism
Antechinus agilis (Agile antechinus)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Metatheria; Dasyuromorphia; Dasyuridae; Antechinus
Attributes
geographic locationAustralia
identified byCatherine Kemper
investigation typephylogenetic study
sample name55356
sexnot determined
tissueliver
AtlasLivingAustraliahttps://biocache.ala.org.au/occurrences/b4177c2c-8316-4db0-bd69-3f2ea7f8bfeb
BPA_library_ID55356
BPA_sample_ID41945
CALLABLE1601496
DNA extraction methodsalting out
ENA first public2021-01-05
ENA last update2020-09-25
ENA-CHECKLISTERC000011
External IdSAMEA7321336
INSDC center aliasAUSTRALIAN NATIONAL UNIVERSITY
INSDC center nameAUSTRALIAN NATIONAL UNIVERSITY
INSDC first public2021-01-05T04:27:29Z
INSDC last update2020-09-25T00:43:12Z
INSDC statuspublic
LOW_COVERAGE151833
NO_COVERAGE608
ReadLength150bp
Submitter Id55356
TCCP_ID55356_HWWJFAFXY_GCAAGAT_S5
bioproject_accessionPRJEB39788
classMammalia
collectionMammal
common nameAgile antechinus
decimal_latitude-38
decimal_longitude140.97
depthmean172.89
depthmedian130
familyDasyuridae
genusAntechinus
geographic location (region and locality)South Australia
institution_nameAustralian Biological Tissue Collection, South Australian Museum
location_text5.5km N, Mount Ruskin, Lower Glenelg River Conservation Park
orderDasyuromorphia
phylumChordata
sequencing methodIllumina SBS, short PE reads
speciesagilis
state_or_regionSouth Australia
tissue_numberABTC79327
tissue_preservationethanol | frozen
totalmapped2tgt0.7427
totalpaired0.728
totalreadsstart3239507
voucher_numberSAMA M23166
voucher_or_tissue_numberSAMA M23166
BioProject
PRJEB39788 Australian marsupial phylogeny
Retrieve all samples from this project

Submission
EBI; 2021-01-06
Accession:
SAMEA7321336
ID:
17239792

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