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Accession: PRJNA74249 ID: 74249

Ictalurus punctatus (channel catfish)

Ictalurus punctatus Transcriptome or Gene expression

See Genome Information for Ictalurus punctatus
A whole transcriptome sequencing of a doubled haploid channel catfish was conducted using paired-end RNA-Seq to generate large-scale transcriptome data to facilitate studies of gene discovery, gene duplication, gene expression profiling, and genome annotation in catfish.
AccessionPRJNA74249
Data TypeTranscriptome or Gene expression
ScopeMonoisolate
OrganismIctalurus punctatus[Taxonomy ID: 7998]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus; Ictalurus punctatus
Publications (total 3)
  • Liu S et al., "Genome-wide identification, characterization and phylogenetic analysis of 50 catfish ATP-binding cassette (ABC) transporter genes.", PLoS One, 2013;8(5):e63895
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SubmissionRegistration date: 11-Oct-2011
Auburn University
RelevanceAgricultural
Locus Tag PrefixM11
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (Transcript)370817
SRA Experiments2
Protein Sequences5330
Publications
PubMed3
PMC2
Other datasets
BioSample1
SRA Data Details
ParameterValue
Data volume, Gbases32
Data volume, Mbytes21867

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