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Accession: PRJNA11776 ID: 11776

Danio rerio strain:Tuebingen (zebrafish)

Genome sequence for Danio rerio (zebrafish), currently maintained by the Genome Reference Consortium (GRC)

See Genome Information for Danio rerio

The Wellcome Trust Sanger Institute began sequencing of the the 1.7 Gb zebrafish (Danio rerio) genome in 2001 using a combined approach of whole genome shotgun (WGS) sequencing with corresponding clone mapping and sequencing. More...

AccessionPRJNA11776
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismDanio rerio[Taxonomy ID: 7955]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio; Danio rerio
Publications
  • Howe K et al., "The zebrafish reference genome sequence and its relationship to the human genome.", Nature, 2013 Apr 25;496(7446):498-503
  • Broughton RE et al., "The complete sequence of the zebrafish (Danio rerio) mitochondrial genome and evolutionary patterns in vertebrate mitochondrial DNA.", Genome Res, 2001 Nov;11(11):1958-67
SubmissionRegistration date: 24-May-2010
Genome Reference Consortium
NCBI Links
Related Resources
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)34905
WGS master2
Genomic DNA2872
Publications
PubMed2
PMC2
Other datasets
BioSample11
Assembly2
Assembly details:
Assembly levelNumber of Assemblies
1
1
2
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_000002035.4ChromosomeSAMN06930106
Tuebingen
GCA_000767325.1ScaffoldCABZ00000000
SAMEA3146315
Tuebingen
Related RefSeq Project
PRJNA13922 : Zebrafish reference genome sequence

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    Danio rerio strain:Tuebingen
    Genome sequence for Danio rerio (zebrafish), currently maintained by the Genome Reference Consortium (GRC)
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