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UNSW_CanFamBas_1.0

Organism name:
Canis lupus familiaris (dog)
Infraspecific name:
Breed: Basenji
Isolate:
UNSW-BAS-2019
Sex:
female
BioSample:
SAMN14380863
BioProject:
PRJNA612738
Submitter:
University of New South Wales
Date:
2020/06/11
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_013276365.1 (replaced)
RefSeq assembly accession:
GCF_013276365.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAAQRD01
Assembly method:
Flye v. 2.6-release; Juicebox v. DEC-2019; PBJelly v. 15.8.24
Expected final version:
yes
Genome coverage:
112.2x
Sequencing technology:
Oxford Nanopore PromethION; BGISEQ-500; Illumina NovaSeq

IDs: 7268391 [UID] 20019798 [GenBank] 20406008 [RefSeq]

See Genome Information for Canis lupus

There are 167 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,345,029,490
Total ungapped length2,344,953,059
Gaps between scaffolds0
Number of scaffolds650
Scaffold N5064,291,023
Scaffold L5014
Number of contigs799
Contig N5037,759,230
Contig L5023
Total number of chromosomes and plasmids39
Number of component sequences (WGS or clone)650

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_013276585.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM023363.1=NC_049742.10
Chromosome 2CM023364.1=NC_049743.112
Chromosome 3CM023365.1=NC_049744.10
Chromosome 4CM023366.1=NC_049745.10
Chromosome 5CM023367.1=NC_049746.10
Chromosome 6CM023368.1=NC_049747.12
Chromosome 7CM023369.1=NC_049748.12
Chromosome 8CM023370.1=NC_049749.16
Chromosome 9CM023371.1=NC_049750.16
Chromosome 10CM023372.1=NC_049751.10
Chromosome 11CM023373.1=NC_049752.18
Chromosome 12CM023374.1=NC_049753.10
Chromosome 13CM023375.1=NC_049754.13
Chromosome 14CM023376.1=NC_049755.12
Chromosome 15CM023377.1=NC_049756.10
Chromosome 16CM023378.1=NC_049757.113
Chromosome 17CM023379.1=NC_049758.11
Chromosome 18CM023380.1=NC_049759.14
Chromosome 19CM023381.1=NC_049760.12
Chromosome 20CM023382.1=NC_049761.10
Chromosome 21CM023383.1=NC_049762.10
Chromosome 22CM023384.1=NC_049763.11
Chromosome 23CM023385.1=NC_049764.10
Chromosome 24CM023386.1=NC_049765.10
Chromosome 25CM023387.1=NC_049766.10
Chromosome 26CM023388.1=NC_049767.13
Chromosome 27CM023389.1=NC_049768.11
Chromosome 28CM023390.1=NC_049769.11
Chromosome 29CM023391.1=NC_049770.10
Chromosome 30CM023392.1=NC_049771.10
Chromosome 31CM023393.1=NC_049772.10
Chromosome 32CM023394.1=NC_049773.10
Chromosome 33CM023395.1=NC_049774.10
Chromosome 34CM023396.1=NC_049775.11
Chromosome 35CM023397.1=NC_049776.10
Chromosome 36CM023398.1=NC_049777.10
Chromosome 37CM023399.1=NC_049778.13
Chromosome 38CM023400.1=NC_049779.10
Chromosome XCM023401.1=NC_049780.12
unplacedn/an/an/a538

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule2,345,029,4906502,344,953,05964,291,0231490
Chromosome 1Assembled molecule122,495,8321122,492,832122,495,83260
Chromosome 2AllAssembled moleculeUnlocalized scaffolds84,212,14883,937,118275,0301311284,210,14883,935,118275,03083,937,11883,937,11840,368440000
Chromosome 3Assembled molecule92,105,948192,104,94892,105,94820
Chromosome 4Assembled molecule88,678,928188,677,92888,678,92820
Chromosome 5Assembled molecule88,932,562188,931,06288,932,56230
Chromosome 6AllAssembled moleculeUnlocalized scaffolds77,634,75877,624,7859,97331277,634,25877,624,2859,97377,624,78577,624,7856,463110000
Chromosome 7AllAssembled moleculeUnlocalized scaffolds80,776,19980,731,06945,13031280,775,19980,730,06945,13080,731,06980,731,06939,906220000
Chromosome 8AllAssembled moleculeUnlocalized scaffolds74,724,48773,571,8951,152,59271674,720,98773,571,8951,149,09273,571,89573,571,8951,082,720707000
Chromosome 9AllAssembled moleculeUnlocalized scaffolds61,161,92961,088,55973,37071661,159,42961,086,05973,37061,088,55961,088,55920,864550000
Chromosome 10Assembled molecule70,337,451170,336,95170,337,45110
Chromosome 11AllAssembled moleculeUnlocalized scaffolds74,396,25574,079,022317,23391874,394,25574,077,022317,23374,079,02274,079,022242,683440000
Chromosome 12Assembled molecule72,601,125172,601,12572,601,12500
Chromosome 13AllAssembled moleculeUnlocalized scaffolds63,225,11063,189,50135,60941363,224,61063,189,00135,60963,189,50163,189,50122,267110000
Chromosome 14AllAssembled moleculeUnlocalized scaffolds60,739,89360,727,89112,00231260,739,89360,727,89112,00260,727,89160,727,8918,952000000
Chromosome 15Assembled molecule64,291,023164,290,02364,291,02320
Chromosome 16AllAssembled moleculeUnlocalized scaffolds60,291,76759,917,745374,0221411360,286,26759,912,245374,02259,917,74559,917,74549,31311110000
Chromosome 17AllAssembled moleculeUnlocalized scaffolds64,434,98864,428,2296,75921164,433,48864,426,7296,75964,428,22964,428,2296,759330000
Chromosome 18AllAssembled moleculeUnlocalized scaffolds55,572,63055,524,94647,68451455,571,13055,523,44647,68455,524,94655,524,94613,658330000
Chromosome 19AllAssembled moleculeUnlocalized scaffolds54,097,31554,051,28146,03431254,095,81554,049,78146,03454,051,28154,051,28140,046330000
Chromosome 20Assembled molecule58,423,659158,423,65958,423,65900
Chromosome 21Assembled molecule51,098,066151,097,06651,098,06620
Chromosome 22AllAssembled moleculeUnlocalized scaffolds61,552,14861,548,9243,22421161,550,64861,547,4243,22461,548,92461,548,9243,224330000
Chromosome 23Assembled molecule52,864,858152,864,35852,864,85810
Chromosome 24Assembled molecule47,805,869147,805,36947,805,86910
Chromosome 25Assembled molecule51,434,566151,434,06651,434,56610
Chromosome 26AllAssembled moleculeUnlocalized scaffolds39,256,93637,989,6901,267,24641339,247,74337,984,4971,263,24637,989,69037,989,6901,248,62919118000
Chromosome 27AllAssembled moleculeUnlocalized scaffolds46,343,89646,255,05888,83821146,343,89646,255,05888,83846,255,05846,255,05888,838000000
Chromosome 28AllAssembled moleculeUnlocalized scaffolds41,336,02641,327,3788,64821141,335,02641,326,3788,64841,327,37841,327,3788,648220000
Chromosome 29Assembled molecule42,015,559142,015,55942,015,55900
Chromosome 30Assembled molecule40,429,152140,429,15240,429,15200
Chromosome 31Assembled molecule39,358,666139,358,66639,358,66600
Chromosome 32Assembled molecule38,764,302138,763,80238,764,30210
Chromosome 33Assembled molecule31,480,421131,479,92131,480,42110
Chromosome 34AllAssembled moleculeUnlocalized scaffolds42,147,96042,143,5124,44821142,147,46042,143,0124,44842,143,51242,143,5124,448110000
Chromosome 35Assembled molecule26,557,760126,557,76026,557,76000
Chromosome 36Assembled molecule31,053,474131,053,47431,053,47400
Chromosome 37AllAssembled moleculeUnlocalized scaffolds30,798,74530,789,4299,31641330,798,74530,789,4299,31630,789,42930,789,4295,442000000
Chromosome 38Assembled molecule24,377,179124,377,17924,377,17900
Chromosome XAllAssembled moleculeUnlocalized scaffolds125,342,258125,260,70881,550312125,328,004125,246,45481,550125,260,708125,260,70851,93823230000
unplacedAssembled molecule11,877,64253811,861,15890,581340
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