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ASM96633v1

Organism name:
Clupea harengus (Atlantic herring)
BioSample:
SAMN03154066
BioProject:
PRJNA265919
Submitter:
BGI
Date:
2015/03/30
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000966335.1 (latest)
RefSeq assembly accession:
GCF_000966335.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
JZKK01
Assembly method:
SOAPdenovo v. 2.04
Genome coverage:
127x
Sequencing technology:
Illumina Hiseq 2000

IDs: 318681 [UID] 1714278 [GenBank] 1804488 [RefSeq]

See Genome Information for Clupea harengus

There are 3 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length807,711,962
Total ungapped length724,956,524
Gaps between scaffolds0
Number of scaffolds6,915
Scaffold N501,860,920
Scaffold L50113
Number of contigs73,682
Contig N5022,275
Contig L508,566
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)73,682

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced807,695,2616,914724,939,8231,860,92066,7670
MoleculeTotal
Length
Mitochondrion MT16,701
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