Format

Download Assembly

Send to:

Choose Destination

ASM207704v2

Organism name:
Rachicladosporium sp. CCFEE 5018 (ascomycetes)
Infraspecific name:
Strain: CCFEE 5018
BioSample:
SAMN06285185
BioProject:
PRJNA342238
Submitter:
University of California, Riverside
Date:
2017/04/03
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_002077045.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
NAEU01
Assembly method:
MaSuRCA v. 2.3.2; Mercator scaffolding v. 2013-01-11; Satsuma v. 3.0
Genome coverage:
175.0x
Sequencing technology:
Illumina MiSeq

IDs: 1121961 [UID] 4560458 [GenBank]

See Genome Information for Rachicladosporium sp. CCFEE 5018

History (Show revision history)

Comment

Sequences were further scaffolded using synteny to the close relative Rachicladosporium antarcticum CCFEE 5527 (GCA_002077065.1).

Global statistics

Total sequence length44,765,267
Total ungapped length44,577,911
Gaps between scaffolds0
Number of scaffolds232
Scaffold N501,358,697
Scaffold L5012
Number of contigs2,123
Contig N5033,691
Contig L50401
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)2,099

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced44,757,33122244,569,9751,358,6971,8910
MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MTAllAssembled moleculeUnlocalized scaffolds7,93607,936100107,93607,9368330833000000
Support Center