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ADKQ00000000.1 marine metagenome

# of Contigs: 16,561
# of Proteins: 0
Total length: 12,733,012 bp
BioProject: PRJNA30011
BioSample: SAMN02954309
Keywords: WGS
Organism: marine metagenomeshow lineagehide lineage
/collection_date = 20-Aug-2006
/country = Antarctica
/isolation_source = Palmer Station B, Arthur Harbor, Antarctic Peninsula, Southern Ocean
/lat_lon = 64.767 S 64.067 W
/mol_type = genomic
WGS: ADKQ01000001:ADKQ01016561
Differences in Antarctic summer and winter marine bacterioplankton revealed by environmental genomics : Unpublished – show 6 authorshide authors
Grzymski,J.J., Riesenfeld,C.S., Ducklow,H., Erickson,M.G., Murray,A.E., US DOE Joint Genome Institute
Submitted (18-FEB-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA – show 12 authorshide authors
Lucas,S., Copeland,A., Tice,H., Bruce,D., Pitluck,S., Tringe,S., Grzymski,J.J., Riesenfeld,C.S., Ducklow,H., Erickson,M.G., Murray,A.E., US DOE Joint Genome Institute

The marine metagenome whole genome shotgun (WGS) project has the project accession ADKQ00000000. This version of the project (01) has the accession number ADKQ01000000, and consists of sequences ADKQ01000001-ADKQ01016561.

URL: JGI Project ID:4044071 Contact:Susannah Tringe ( Alison Murray ( Antarctic Marine Bacterioplankton Winter Metagenome Sampling Strategy: Seawater was initially passed through an in-line GF/A filter (nominal 1.6 um cutoff) then through cartridge filters (Millipore Sterivex) using a peristaltic pump to collect the bacterioplankton biomas. Sample Isolation: See Massana et al. 1997 Appl. Environ. Microbiol. 63(1):50-56. RNAse was added along with proteinase K. Large bore pipet tips and shaking/inverting rather than vortexing precautions were used to prevent shearing. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (

Organism Display Name : Marine Bacterioplankton communities from Antarctic
GOLD Stamp ID : Gm00006
Assembly Method : lucy / pga
Isolation Site : Palmer Station B, Arthur Harbor, Antarctic Peninsula
Temperature Range : Psychrophile
Diseases : None
Habitat : Antarctic, Marine
Collection Date : 20-Aug-2006
Latitude : -64.767
Longitude : -64.067
Depth : 10m
GenBank:ADKQ01.1.gbff.gz 6.6 Mb
FASTA:ADKQ01.1.fsa_nt.gz 3.9 Mb
ASN.1:ADKQ01.1.bbs.gz 3.4 Mb
Minor Version Create Date
1 03/11/2010
5 11/11/2017
6 11/18/2017
7 03/29/2020