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Taxonomy browser (Apostichopus japonicus)

Apostichopus japonicus

Taxonomy ID: 307972 (for references in articles please use NCBI:txid307972)
current name
Apostichopus japonicus (Selenka, 1867)
homotypic synonym:
Stichopus japonicus
Genbank common name: Japanese sea cucumber
NCBI BLAST name: sea cucumbers
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 9 (Echinoderm Mitochondrial; Flatworm Mitochondrial)
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Echinodermata; Eleutherozoa; Echinozoa; Holothuroidea; Aspidochirotacea; Aspidochirotida; Stichopodidae; Apostichopus
   Entrez records   
Database name Direct links
Nucleotide 400,919
Protein 30,983
Structure 2
Genome 1
Popset 11
GEO Datasets 116
PubMed Central 489
Gene 13
SRA Experiments 846
Protein Clusters 13
Identical Protein Groups 30,512
Bio Project 132
Bio Sample 763
Assembly 2
Probe 33
Taxonomy 1

Genome Information

Go to NCBI genomic BLAST page for Apostichopus japonicus

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
GOLD Multi-Isolate Organism: Go0384915 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
WebScipio: Apostichopus japonicus organism-specific WebScipio - eukaryotic gene identification
2 records from this provider taxonomy/phylogenetic World Register of Marine Species
2 records from provider organism-specific diArk - a resource for eukaryotic genome research
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

To hide organism modifiers click here
isolate
16S-B1 [1] 16S-B2 [1] 16S-B3 [1] 16S-B4 [1]
16S-B5 [1] 16S-P1 [1] 16S-P2 [1] 16S-P3 [1]
16S-P4 [1] 16S-P5 [1] 16S-W1 [1] 16S-W2 [1]
16S-W3 [1] 16S-W4 [1] 16S-W5 [1] Ajkazal [1 1]
Ajserpin [1 1] C1.2 [1 1] C10.2 [1 1] C3.1 [1 1]
C3.3 [1 1] C4.2 [1 1] C5.1 [1 1] C5.2 [1 1]
C6.1 [1 1] C6.2 [1 1] C7.1 [1 1] C7.3 [1 1]
C9.2 [1 1] C9.3 [1 1] CN17 [2] DL1 [5 1]
DL10 [6 1] DL12 [6 1] DL3 [6 1] DL4 [6 1]
DL5 [6 1] DL6 [6 1] DL8 [6 1] DL9 [6 1]
H321 [1 13] JBRI-0812-Red [1 13] JBRI-0813-Green [1 13] JBRI-0814-Black [1 13]
K1.1 [1 1] K1.2 [1 1] K2.1 [1 1] K4.1 [1 1]
K4.2 [1 1] K5 [1 1] K6.2 [1 1] K7.1 [1 1]
K7.2 [1 1] K8.1 [1 1] K8.2 [1 1] K8.3 [1 1]
K9.2 [1 1] LO1 [1 13] R1.1 [1 1] R1.2 [1 1]
R10.2 [1 1] R2 [1 1] R3.1 [1 1] R4.1 [1 1]
R4.2 [1 1] R4.3 [1 1] R6.2 [1 1] R7.1 [1 1]
R7.3 [1 1] R8.1 [1 1] R8.2 [1 1] R9.1 [1 1]
R9.2 [1 1] Red race 01 [1 13] Red race 02 [1 13] SDJM SAA [1 1]
Sea cucumber body tissue [1] Shaxun [1 2 2772 30221 17] W112 [1 13] WH24 [6 1]
WH25 [6 1] WH26 [6 1] WH27 [6 1] WH28 [6 1]
WH33 [6 1] WH34 [6 1] WH35 [6 1] WH36 [1]
YT13 [6 1] YT14 [6 1] YT15 [6 1] YT16 [6 1]
YT17 [6 1] YT19 [6 1] YT20 [6 1] YT22 [6]
YT23 [6 1] biological replicate 1 [4 1] black [2 1 13 1] black color variant [2 1 1 1]
coast of Qingdao [1 1] green [2 1 13 1] green color variant [1 1 1 1] green-color [1 1 4]
huadl3021 [1 1] lxwyf#01 [1 1] red [2 1 13 1] red color variant [2 1 1 1]
specimen-voucher
GREEN01 [1] GREEN02 [1] GREEN03 [1] GREEN04 [1]
GREEN05 [1] PURPLE01 [1] PURPLE02 [1] PURPLE03 [1]
PURPLE04 [1] PURPLE05 [1] WHITE01 [1] WHITE02 [1]
WHITE03 [1] WHITE04 [1] WHITE05 [1] fwh 04 [1 1]
iocas sxapja [1 1]
ecotype
black type [1 13] blue type [1 13] red type [1 13]
bio-material
RNA-Seq No. c103121_g1_i1 [1 1] RNA-Seq No. c104586_g1_i1 [1 1] RNA-Seq No. c105868_g1_i1 [1 1] RNA-Seq No. c106676_g1_i1 [1 1]
RNA-Seq No. c107527_g1_i1 [1 1] RNA-Seq No. c108951_g1_i5 [1 1] RNA-Seq No. c108952_g1_i1 [1 1] RNA-Seq No. c109296_g1_i1 [1 1]
RNA-Seq No. c109365_g1_i1 [1 1] RNA-Seq No. c110721_g2_i1 [1 1] RNA-Seq No. c112637_g1_i1 [1 1] RNA-Seq No. c113386_g1_i1 [1 1]
RNA-Seq No. c113922_g1_i1 [1 1] RNA-Seq No. c114308_g1_i3 [1 1] RNA-Seq No. c117553_g1_i2 [1 1] RNA-Seq No. c118405_g1_i2 [1 1]
RNA-Seq No. c119986_g1_i1 [1 1] RNA-Seq No. c91732_g1_i1 [1 1] RNA-Seq No. comp286967_c0_seq1 [1 1] RNA-Seq No. comp286967_c0_seq2 [1 1]
RNA-Seq No. comp298405_c0_seq2 [1 1] RNA-Seq No. comp298405_c0_seq4 [1 1] RNA-Seq No. comp299000_c1_seq27 [1 1] RNA-Seq No. comp299166_c0_seq1 [1 1]
RNA-Seq No. comp301198_c0_seq2 [1 1] RNA-Seq No. comp302739_c0_seq1 [1 1] RNA-Seq No. comp302781_c0_seq1 [1 1] RNA-Seq No. comp305748_c0_seq3 [1 1]
RNA-Seq No. comp306474_c0_seq1 [1 1] RNA-Seq No. comp308908_c0_seq2 [1 1] RNA-Seq No. comp309469_c0_seq3 [1 1] RNA-Seq No. comp310128_c0_seq3 [1 1]
RNA-Seq No. comp311514_c0_seq2 [1 1] RNA-Seq No. comp314957_c1_seq5 [1 1] RNA-Seq No. comp315446_c0_seq1 [1 1] RNA-Seq No. comp315473_c0_seq4 [1 1]
RNA-Seq No. comp316072_c0_seq1 [1 1] RNA-Seq No. comp316127_c0_seq2 [1 1] RNA-Seq No. comp317602_c0_seq2 [1 1] RNA-Seq No. comp318325_c0_seq1 [1 1]


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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