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Taxonomy browser (Danio rerio)

Danio rerio

Taxonomy ID: 7955 (for references in articles please use NCBI:txid7955)
current name
Danio rerio (Hamilton, 1822)
Cyprinus rerio Hamilton, 1822
homotypic synonym:
Brachydanio rerio
Genbank common name: zebrafish
NCBI BLAST name: bony fishes
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Other names:
heterotypic synonym
Brachydanio rerio frankei
heterotypic synonym
Danio frankei
heterotypic synonym
Danio rerio frankei
common name(s) leopard danio, zebra danio, zebra fish
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Osteoglossocephalai; Clupeocephala; Otomorpha; Ostariophysi; Otophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Danionidae; Danioninae; Danio
   Entrez records   
Database name Direct links
Nucleotide 1,894,597
Protein 88,861
Structure 484
Genome 1
Popset 134
Conserved Domains 2
GEO Datasets 33,369
PubMed Central 20,882
Gene 100,231
HomoloGene 14,559
SRA Experiments 94,380
GEO Profiles 328,737
Protein Clusters 1
Identical Protein Groups 60,905
Bio Project 2,173
Bio Sample 61,577
Bio Systems 1,797
Assembly 19
Probe 80,687
PubChem BioAssay 1,414
Taxonomy 1

Genome Information

See the NCBI Genome homepage
Go to NCBI genomic BLAST page for Danio rerio

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
DNA barcoding : Danio rerio taxonomy/phylogenetic Barcodes of Life
32 records from this provider supplemental materials Dryad Digital Repository
4 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
639469800: Danio rerio Tuebingen organism-specific Integrated Microbial Genomes
Danio rerio (Hamilton, 1822) taxonomy/phylogenetic Integrated Taxonomic Information System
Danio rerio taxonomy/phylogenetic Lifemap
Zebrafish Model Organism Database taxonomy/phylogenetic NCBI taxonomy bookmarks
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
2 records from this provider taxonomy/phylogenetic Plazi
UCSCgb sequence screening/similarity/alignment UCSC Genome Browser
2 records from this provider organism-specific WebScipio - eukaryotic gene identification
2 records from this provider taxonomy/phylogenetic World Register of Marine Species
3 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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