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Conserved domains on  [gi|2089760734|ref|NP_001382885|]
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uncharacterized protein LOC76505 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PLN02960 super family cl33608
alpha-amylase
29-52 6.56e-03

alpha-amylase


The actual alignment was detected with superfamily member PLN02960:

Pssm-ID: 215519 [Multi-domain]  Cd Length: 897  Bit Score: 32.88  E-value: 6.56e-03
                          10        20
                  ....*....|....*....|....
gi 2089760734  29 YFEPGLQEAHKWRMQRPLVDRDLR 52
Cdd:PLN02960  374 HWEPPPEEAYKWKFERPKVPKSLR 397
 
Name Accession Description Interval E-value
PLN02960 PLN02960
alpha-amylase
29-52 6.56e-03

alpha-amylase


Pssm-ID: 215519 [Multi-domain]  Cd Length: 897  Bit Score: 32.88  E-value: 6.56e-03
                          10        20
                  ....*....|....*....|....
gi 2089760734  29 YFEPGLQEAHKWRMQRPLVDRDLR 52
Cdd:PLN02960  374 HWEPPPEEAYKWKFERPKVPKSLR 397
 
Name Accession Description Interval E-value
PLN02960 PLN02960
alpha-amylase
29-52 6.56e-03

alpha-amylase


Pssm-ID: 215519 [Multi-domain]  Cd Length: 897  Bit Score: 32.88  E-value: 6.56e-03
                          10        20
                  ....*....|....*....|....
gi 2089760734  29 YFEPGLQEAHKWRMQRPLVDRDLR 52
Cdd:PLN02960  374 HWEPPPEEAYKWKFERPKVPKSLR 397
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.19
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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