1R30,4JXC,1OLT,2QGQ,5HR7,6DJT,2FB2


Conserved Protein Domain Family
Radical_SAM

?
pfam04055: Radical_SAM 
Click on image for an interactive view with Cn3D
Radical SAM superfamily
Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation.
Statistics
?
PSSM-Id: 397943
Aligned: 500 rows
Threshold Bit Score: 33.6477
Threshold Setting Gi: 81550367
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
1R30_B  72 KTGACPEDCKYCPQSSRyk---------tGLEAERLMEVEQVLESA---RKAK-------AAg-sTRFCMGAAWkNPHER 131 Escherichia coli
P9WH15 122 SQAGCGMACPFCATGQ--------------GGLTRNLSTAEILEQV---RAGAaalrddfGDr-lSNVVFMGMGePLANY 183 Mycobacterium tubercu...
Q51385 113 SQAGCALDCSFCSTGKQgfnsdltaaeviGQVWIANKSFGTVPAKI---DRAI------------TNVVMMGMGePLLNF 177 Pseudomonas aeruginos...
5HR7_A 121 SQVGCALECKFCSTAQQgfnr----nlrvSEIIGQVWRAAKIVGAA---KVTGq------RPi--TNVVMMGMGePLLNL 185 Escherichia coli
Q9KTX3 110 SQVGCALECKFCSTAQQgfnrn---lrvsEIIGQVWRAAREIGLEK---ETGRr------PI---TNVVMMGMGePLLNM 174 Vibrio cholerae O1 bi...
P57373 118 SQIGCSLKCHFCATGQEgfq------rnlKVSEIIAQIWQANKRLK---EKNIk-----kNI---TNIVFMGMGePLLNL 180 Buchnera aphidicola s...
Q9CJJ8 131 SQVGCALACTFCSTAQ--------------QGFNRNLTVSEIIGQV---WRAS-------KI---IGNFGVTGVrPITNV 183 Pasteurella multocida...
Q9PG43 135 SQIGCGLNCTFCSTATQgfnrnlttaeiiGQVWVAARHLGNVPHQQ---RRL-------------TNVVMMGMGePLMNF 198 Xylella fastidiosa 9a5c
Q9ABT6 135 SQVGCTLNCSFCHTGTQplvrn---ltaaEIVAQVQVAKDDLAEWP---SDKe-------DRq-lSNIVFMGMGePLYNL 200 Caulobacter vibrioide...
Q93XX3 202 SQVGCAMNCQFCYTG--------------RMGLKRNLTTAEIVEQAvyaRRLLs-----hEVgsiTNVVFMGMGePFHNI 262 thale cress
1R30_B 132 DMPYLEQMVQGVk-----------------AMGLEACMTLGTLSesQAQRLANAG-LDYYNHNLDTSPEF----YGNII- 188 Escherichia coli
P9WH15 184 ARVLAAVQRITArpps----------gfgiSARAVTVSTVGLAP--AIRNLADARlGVTLALSLHAPDDGlr-dTLVPVn 250 Mycobacterium tubercu...
Q51385 178 DNVVAAMNIMMDdlg------------ygiSKRKVTLSTSGVVP--MIDKLGEVI-DVSLALSLHAPNDElrnkLVPIN- 241 Pseudomonas aeruginos...
5HR7_A 186 NNVVPAMEIMLDdfg------------fglSKRRVTLSTSGVVP--ALDKLGDMI-DVALAISLHAPNDEirdeIVPIN- 249 Escherichia coli
Q9KTX3 175 KNLIPALEIMLDdlg------------fglSKRRVTVSTSGVVS--GLEQMIGQI-DVALAISLHAPNDKlrseIMPIN- 238 Vibrio cholerae O1 bi...
P57373 181 KNVVSALTIILDeyg------------fglSKRRVTLSTSGIVP--ALDKLRNMI-DVSLAISLHAPNDFir-nIIMPIn 244 Buchnera aphidicola s...
Q9CJJ8 184 VMMGMGEPLLNVanvvpameimlddfayglSKRRVTLSTSGVVP--ALDKLSEMI-DVALAISLHAPNDElrdeIVPIN- 259 Pasteurella multocida...
Q9PG43 199 DNVVRAMSVMRDdlg------------yglSNKRVTLSTSGLVP--MIDRLSTES-DVSLAVSLHAPNDKlr-eQLVPLn 262 Xylella fastidiosa 9a5c
Q9ABT6 201 GQVADAIEIISDneg------------iaiSRRRITVSTSGVVP--MLEKLGSTT-QAMLAISLHATNDPlr-dVLVPLn 264 Caulobacter vibrioide...
Q93XX3 263 DNVIKAANIMVDeng------------lhfSPRKVTVSTSGLVP--QLKRFLRES-NCALAVSLNATTDE----VRNWIm 323 thale cress
1R30_B 189 ---TTRTYQERLDTLEKVRDAGIK-----VCSGGIVGLGETVKdrAGL 228 Escherichia coli
P9WH15 251 ---NRWRISEALDAARYYANVTGRr----VSIEYALIRDVNDQpwRad 291 Mycobacterium tuberculosis H37Rv
Q51385 242 ---KKYPLGMLLDACRRYISR-LGek-rvLTVEYTLLKDVNDQp-EHA 283 Pseudomonas aeruginosa PAO1
5HR7_A 250 ---KKYNIETFLAAVRRYLEK-SNanqgrVTIEYVMLDHVNDg-tEHA 292 Escherichia coli
Q9KTX3 239 ---DRWNIEAFLEVVRRYIAS-SNanrgkVTVEYVLLDHVNDGt-EHA 281 Vibrio cholerae O1 biovar El Tor str. N16961
P57373 245 ---RKYNISSVLSSALKYFKY-SNanrggITIEYVMLDRINDSn-ENA 287 Buchnera aphidicola str. APS (Acyrthosiphon pisum)
Q9CJJ8 260 ---KKYNIKMLMDSVNRYLSV-SNanhgkVTIEYVMLDHVNDGv-EHA 302 Pasteurella multocida subsp. multocida str. Pm70
Q9PG43 263 ---KKYPIAELMASCERYLSVNRKrd--sVTFEYTLMKGVNDKq-EHA 304 Xylella fastidiosa 9a5c
Q9ABT6 265 ---KKYPIAELMAGIRAYPGL-SNar--rVTFEYVMLKGVNDSp-EEA 305 Caulobacter vibrioides CB15
Q93XX3 324 pinRKYKLSLLLETLREGLSSRHKy---kVLFEYVMLAGVNDSm-DDA 367 thale cress
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap