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SRX1988235: Quercus robur leaves stage B P. croceum + P. penetrans treatment replicate 3
1 ILLUMINA (Illumina HiSeq 2000) run: 17.7M spots, 3.5G bases, 2.4Gb downloads

Design: Tru-Seq v2 was used to produce sequences with a read length of 100 bp from paired-end libraries (average insert size 200 bp) which were sequenced using an Illumina HiSeq 2000.
Submitted by: Humboldt Universitaet
Study: Quercus robur cultivar:DF159 Transcriptome or Gene expression
show Abstracthide Abstract
Pedunculate oak (Quercus robur L.), an important forest tree in temperate ecosystems, displays an endogenous rhythmic growth pattern, characterized by alternating shoot and root growth flushes paralleled by oscillations in carbon allocation to below- and aboveground tissue. This common plant trait so far has largely been neglected as a determining factor for the outcome of plant biotic interactions. This study investigated the transcriptomic response of oak to migratory root-parasitic nematodes Pratylenchus penetrans in relation to rhythmic growth, and how this plant-nematode interaction is modulated by an ectomycorrhizal symbiont Piloderma croceum. This work was part of the research program TrophinOak (www.trophinoak.de) of seven research groups working with oak microcuttings to study gene expression and resource allocation in multitrophic interactions, funded by the DFG, German Research Foundation.
Sample: Quercus robur DF159 leaves stage B P. croceum + P. penetrans replicate 3
SAMN05437236 • SRS1592193 • All experiments • All runs
Organism: Quercus robur
Library:
Name: HM4
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
forward101  reverse

Runs: 1 run, 17.7M spots, 3.5G bases, 2.4Gb
Run# of Spots# of BasesSizePublished
SRR398622017,748,9773.5G2.4Gb2016-11-28

ID:
2860663

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