U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioProject

SRX11222463: Scaffolding of Pc123 genome using PacBio long reads
1 PACBIO_SMRT (Sequel) run: 761,566 spots, 11.9G bases, 2.8Gb downloads

Design: Long reads were generated from the genome of Pc123 and used to scaffold the PcB1v2 assembly using SSPACE-LongRead.
Submitted by: University of Exeter
Study: Genome sequencing a nematophagous fungus
show Abstracthide Abstract
The fungus is a biocontrol agent of economically important plant parasitic nematodes (e.g. root knot nematodes), which cause extensive damage to crops worldwide. There is currently no means to control these plant disease agents. This problem is of particular importance because the use of the fumigant methyl bromide (an ozone depleting and greenhouse effect agent) has been forbidden. Additionally, other nematocides (carbamates and organophosphorates) pose significant health and environmental hazards. Sequencing of the <i>P. chlamydosporia</i> genome will help understand the pathogenicity and the environmental adaptation of the fungus and help to optimise its use in sustainable agriculture. Comparison with other recently sequenced pathogens will help to understand the evolution of mechanisms of pathogenicity in these fungal pathogens of biotechnological interest.
Sample:
SAMN18640444 • SRS9275821 • All experiments • All runs
Library:
Name: Pc123PacBio
Instrument: Sequel
Strategy: WGS
Source: GENOMIC
Selection: unspecified
Layout: SINGLE
Runs: 1 run, 761,566 spots, 11.9G bases, 2.8Gb
Run# of Spots# of BasesSizePublished
SRR14907880761,56611.9G2.8Gb2021-06-25

ID:
14980331

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...