Illumina amplicon sequencing of metagenomic paired-end library 'Solex... - SRA

SRX450648: Illumina amplicon sequencing of metagenomic paired-end library 'Solexa-213046' containing sample 'M42D0pre' from individual 'Balbc M avium Infected Mouse 2 Day 0pre'
1 ILLUMINA (Illumina MiSeq) run: 4,037 spots, 1.4M bases, 857,938b downloads

UUID: 719ef45c-119a-4e85-b4ac-2caf831476c0

Design: Illumina sequencing of Mycobacterium avium M42D0pre via polymerase chain reaction

Submitted by: Broad Institute (BI)

Study: TB-ARC - Microbiome

PRJNA219721 • SRP032325 • All experiments • All runs

Sample:

SAMN02580626 • SRS544037 • All experiments • All runs

Organism: Mycobacterium avium M42D0pre

Library:

Name: Solexa-213046

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: METAGENOMIC

Selection: PCR

Layout: PAIRED

Spot descriptor:

1 forward176 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithoutReference

data_type: WGS

gssr_id: 467799.0

library_type: 16S

lsid: broadinstitute.org:bsp.prod.sample:5C1VD

material_type: DNA:DNA Somatic

product_order: PDO-2661

product_part_number: P-WG-0004

project: G56560

research_project: RP-548

root_sample_id: SM-4QNYB

sample_id: SM-5C1VD

work_request: 39974

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2014-01-25 18:11:15.0	GAPipeline	RTA1.18.42	Sequencer Application 2.3.0.3

Runs: 1 run, 4,037 spots, 1.4M bases, 857,938b

Run	# of Spots	# of Bases	Size	Published
SRR1145466	4,037	1.4M	857,938b	2014-01-27

ID:: 629596

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Sequence Read Archive

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