Identification and characterization of microRNAs from Chinese pollina... - SRA

SRX796055: Identification and characterization of microRNAs from Chinese pollination constant non-astringent persimmon using high-throughput sequencing
1 ILLUMINA (Illumina Genome Analyzer II) run: 7.6M spots, 557.3M bases, 343.1Mb downloads

Design: As the soluble tannin underwent the greatest change between 15 and 20 WAF, and the insoluble tannin increased to the largest amount during this stage, the fruits at these two stages were selected for miRNA sequencing in the subsequent work.Two small RNA libraries established using ‘Eshi No. 1’ persimmon (Diospyros kaki Thunb.; CPCNA) fruits collected at 15 and 20 weeks after flowering (WAF) were sequenced through Solexa platform in order to identify miRNAs involved in deastringency of persimmon.

Submitted by: Huazhong Agricultural University

Study: Diospyros kaki cultivar:Eshi No. 1 Transcriptome or Gene expression

PRJNA269202 • SRP050516 • All experiments • All runs

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The CPCNA-type fruits are able to lose astringency naturally at ripening stage, thus justifying their significant value as commercial use. And CPCNA cultivars hold great potential for breeding new cultivars of PCNA type. However, limited information is available on the molecular mechanism underlying fruit (de)astringency of CPCNA persimmon. Therefore, elucidation of the molecular mechanisms underlying natural loss of fruit astringency in CPCNA persimmon is of paramount significance for persimmon genetic improvement.

Sample:

SAMN03252487 • SRS778823 • All experiments • All runs

Organism: Diospyros kaki

Library:

Name: 20WAF_small RNA

Instrument: Illumina Genome Analyzer II

Strategy: miRNA-Seq

Source: OTHER

Selection: unspecified

Layout: SINGLE

Spot descriptor:

1 forward

Runs: 1 run, 7.6M spots, 557.3M bases, 343.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR1693232	7,634,169	557.3M	343.1Mb	2014-12-12

ID:: 1139586

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