U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LINC01002 long intergenic non-protein coding RNA 1002 [ Homo sapiens (human) ]

    Gene ID: 399844, updated on 10-Oct-2023

    Summary

    Go to the top of the page Help
    Official Symbol
    LINC01002provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1002provided by HGNC
    Primary source
    HGNC:HGNC:38538
    See related
    AllianceGenome:HGNC:38538
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in testis (RPKM 21.8), bone marrow (RPKM 15.1) and 19 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    19p13.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (197016..202209, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (148274..153467, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (197016..202209, complement)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene septin 14 pseudogene 19 Neighboring gene capicua transcriptional repressor pseudogene 19 Neighboring gene uncharacterized LOC101928344 Neighboring gene RNA, U6 small nuclear 1076, pseudogene Neighboring gene general transcription factor IIi pseudogene 19

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. LINC01002 Targets miR-650/FLNA Pathway to Suppress Prostate Cancer Progression. Qian L, et al. Urol Int, 2023. PMID 37040719

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LINC01002 Targets miR-650/FLNA Pathway to Suppress Prostate Cancer Progression.
      Title: LINC01002 Targets miR-650/FLNA Pathway to Suppress Prostate Cancer Progression.
    Submit: New GeneRIF Correction

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

    Go to the top of the page Help

    Markers

    Clone Names

    • FLJ45445, FLJ56364

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028324.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC010507, AC092299

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      197016..202209 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      148274..153467 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001004321.2: Suppressed sequence

      Description
      NM_001004321.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.