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    LOC102723561 uncharacterized LOC102723561 [ Homo sapiens (human) ]

    Gene ID: 102723561, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC102723561
    Gene description
    uncharacterized LOC102723561
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC102723561 in Genome Data Viewer
    Location:
    5p14.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (21138092..21176356, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (21140085..21349674, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374678 Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 8 Neighboring gene uncharacterized LOC124900950 Neighboring gene MPRA-validated peak5181 silencer Neighboring gene uncharacterized LOC124900951 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:21325279-21325852 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:21471616-21472269 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:21481591-21482218 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:21482219-21482846 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:21484729-21485355 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:21485356-21485982 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:21485983-21486609 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:21494970-21495648 Neighboring gene GUSB pseudogene 1 Neighboring gene uncharacterized LOC124900949

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      21138092..21176356 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001742404.1 RNA Sequence

    2. XR_001742405.1 RNA Sequence

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_009646199.1 Reference GRCh38.p14 PATCHES

      Range
      39746..78010 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_427687.3 RNA Sequence

    2. XR_953204.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      21140085..21349674 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007075522.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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