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    psmC4 26S protease regulatory subunit 6B [ Dictyostelium discoideum AX4 ]

    Gene ID: 8626913, updated on 17-May-2024

    Summary

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    Gene symbol
    psmC4
    Gene description
    26S protease regulatory subunit 6B
    Primary source
    dictyBase:DDB_G0289003
    Locus tag
    DDB_G0289003
    Gene type
    protein coding
    RNA name
    26S protease regulatory subunit 6B
    RefSeq status
    PROVISIONAL
    Organism
    Dictyostelium discoideum AX4 (strain: AX4)
    Lineage
    Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium
    Old locus tag
    DDBDRAFT_0188209; DDBDRAFT_0191435; DDB_0188209; DDB_0191435
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_007091.3 (2227887..2229274)

    Chromosome 5 - NC_007091.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene solute carrier family 44 protein member 2 Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_007091.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. STATc is a key regulator of the transcriptional response to hyperosmotic shock. Na J, et al. BMC Genomics, 2007 May 21. PMID 17517120, Free PMC Article
    2. Proteomic analysis of Legionella-containing phagosomes isolated from Dictyostelium. Shevchuk O, et al. Int J Med Microbiol, 2009 Nov. PMID 19482547
    3. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by dictyBase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables proteasome-activating activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within hyperosmotic response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in positive regulation of proteasomal protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in phagocytic vesicle HDA PubMed 
    part_of proteasome complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of proteasome regulatory particle ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    part_of proteasome regulatory particle, base subcomplex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Names
    26S protease regulatory subunit 6B
    26S proteasome subunit ATPase 4
    HIV TAT binding-protein-related

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_007091.3 Reference assembly

      Range
      2227887..2229274
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_631330.1 → XP_636422.1  26S protease regulatory subunit 6B [Dictyostelium discoideum AX4]

      See identical proteins and their annotated locations for XP_636422.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P34123, Q54I49
      Conserved Domains (2) summary
      PTZ00454
      Location:6 → 403
      PTZ00454; 26S protease regulatory subunit 6B-like protein; Provisional
      pfam00004
      Location:187 → 320
      AAA; ATPase family associated with various cellular activities (AAA)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q54I49.1

    Gene LinkOut

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