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    BAGE5 BAGE family member 5 [ Homo sapiens (human) ]

    Gene ID: 85316, updated on 10-Oct-2023

    Summary

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    Official Symbol
    BAGE5provided by HGNC
    Official Full Name
    BAGE family member 5provided by HGNC
    Primary source
    HGNC:HGNC:15732
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CT2.5
    Annotation information
    Annotation category: only annotated on patches unit in reference assembly
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    Genomic context

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    See BAGE5 in Genome Data Viewer
    Location:
    13cen
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 (PATCHES) NW_011332699.1 (76210..170143)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (13741153..13836693, complement)

    NW_011332699.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain-containing protein 36B-like Neighboring gene vomeronasal 1 receptor 111 pseudogene Neighboring gene family with sequence similarity 230 member C Neighboring gene eukaryotic translation initiation factor 3 subunit F pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BAGE: a new gene encoding an antigen recognized on human melanomas by cytolytic T lymphocytes. Boël P, et al. Immunity, 1995 Feb. PMID 7895173
    2. BAGE genes generated by juxtacentromeric reshuffling in the Hominidae lineage are under selective pressure. Ruault M, et al. Genomics, 2003 Apr. PMID 12676563
    3. New BAGE (B melanoma antigen) genes mapping to the juxtacentromeric regions of human chromosomes 13 and 21 have a cancer/testis expression profile. Ruault M, et al. Eur J Hum Genet, 2002 Dec. PMID 12461691

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Variation

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    See studies and variants in dbVar

    Genotypes

    General gene information

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    Markers

    Gene Ontology Provided by GOA

    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    B melanoma antigen 5
    Names
    B melanoma antigen family member 5
    cancer/testis antigen 2.5
    cancer/testis antigen family 2, member 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_182484.2 → NP_872290.1  B melanoma antigen 5 precursor

      See identical proteins and their annotated locations for NP_872290.1

      Status: VALIDATED

      Source sequence(s)
      AL161418
      UniProtKB/Swiss-Prot
      Q86Y27
      UniProtKB/TrEMBL
      Q29RY1
      Conserved Domains (1) summary
      pfam08180
      Location:1 → 28
      BAGE; B melanoma antigen family

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_011332699.1 Reference GRCh38.p14 PATCHES

      Range
      76210..170143
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      13741153..13836693 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q86Y27.1 GenPept UniProtKB/Swiss-Prot:Q86Y27

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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