U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    PF3D7_1415800 ribosomal RNA small subunit methyltransferase A1 [ Plasmodium falciparum 3D7 ]

    Gene ID: 811737, updated on 17-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    PF3D7_1415800
    Gene description
    ribosomal RNA small subunit methyltransferase A1
    Primary source
    PlasmoDB:PF3D7_1415800
    Locus tag
    PF3D7_1415800
    See related
    VEuPathDB:PF3D7_1415800
    Gene type
    protein coding
    RNA name
    ribosomal RNA small subunit methyltransferase A1
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PF3D7_1415800 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    1
    Sequence:
    Chromosome: 14; NC_037283.1 (640374..641519)

    Chromosome 14 - NC_037283.1Genomic Context describing neighboring genes Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene serine palmitoyltransferase, putative Neighboring gene zinc finger protein, putative Neighboring gene conserved Plasmodium protein, unknown function

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037283.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Characterization of a Plasmodium falciparum rRNA methyltransferase. Gupta K, et al. Mol Biochem Parasitol, 2018 Jul. PMID 29909066
    2. PfKsgA1 functions as a transcription initiation factor and interacts with the N-terminal region of the mitochondrial RNA polymerase of Plasmodium falciparum. Gupta A, et al. Int J Parasitol, 2021 Jan. PMID 32896572
    3. Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Nature, 2002 Oct 3. PMID 12368864, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables rRNA methyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA-templated transcription initiation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ribosomal RNA small subunit methyltransferase A1
    XP_001348329.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037283.1 Reference assembly

      Range
      640374..641519
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001348293.1 → XP_001348329.1  ribosomal RNA small subunit methyltransferase A1 [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001348329.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024V1A0, A0A024VL60, A0A024W0Y0, A0A024WGX4, A0A024X2E1, A0A0L1I350, A0A0L7KE05, A0A0L7M125, A0A2I0C2F8, Q8ILT8, W4IB94, W4IUW5, W7F864, W7FLC7, W7JH21, W7JMC5
      Conserved Domains (1) summary
      PTZ00338
      Location:63 → 353
      PTZ00338; dimethyladenosine transferase-like protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Miscellaneous