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    PHATR_44189 hypothetical protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

    Gene ID: 7204105, updated on 21-Dec-2023

    Summary

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    Gene symbol
    PHATR_44189
    Gene description
    hypothetical protein
    Locus tag
    PHATR_44189
    Gene type
    protein coding
    RNA name
    predicted protein
    RefSeq status
    PROVISIONAL
    Organism
    Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
    Lineage
    Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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    Genomic context

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    See PHATR_44189 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_011671.1 (1237524..1242470)

    Chromosome 3 - NC_011671.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_011671.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables fatty-acyl-CoA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in polysaccharide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    hypothetical protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_011671.1 Reference assembly

      Range
      1237524..1242470
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002186176.1 → XP_002186212.1  predicted protein [Phaeodactylum tricornutum CCAP 1055/1]

      See identical proteins and their annotated locations for XP_002186212.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B5Y5M6
      Conserved Domains (4) summary
      cd07993
      Location:1301 → 1506
      LPLAT_DHAPAT-like; Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like
      COG0399
      Location:251 → 419
      WecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [Cell wall/membrane/envelope biogenesis]
      pfam00887
      Location:12 → 104
      ACBP; Acyl CoA binding protein
      cl21454
      Location:768 → 1044
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein
    Heading Accession and Version

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