tmpob thymopoietin b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: tmpobprovided by ZNC
Official Full Name: thymopoietin bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-050522-8
See related: Ensembl:ENSDARG00000022978 AllianceGenome:ZFIN:ZDB-GENE-050522-8
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: wu:fa17b10; wu:fi69e10; zgc:110551
Summary: Predicted to enable DNA binding activity. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Orthologous to human TMPO (thymopoietin). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 25

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	25	NC_007136.7 (3294374..3302666)
105	previous assembly	GRCz10 (GCF_000002035.5)	25	NC_007136.6 (3168630..3176922)

Chromosome 25 - NC_007136.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

fd10c11.y1 (e-PCR)
- UniSTS:195102

fa17b10.s1 (e-PCR)
- UniSTS:202410

fi69e10.x1 (e-PCR)
- UniSTS:197872

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in nuclear envelope	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: thymopoietin b

Names: lamina-associated polypeptide 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001020598.1 → NP_001018434.1 thymopoietin b

See identical proteins and their annotated locations for NP_001018434.1

Status: PROVISIONAL

Source sequence(s)

BC095307

UniProtKB/TrEMBL

Q503J3

Related

ENSDARP00000033049.7, ENSDART00000030683.8

Conserved Domains (2) summary

cd12940
Location:95 → 136

LEM_LAP2_LEMD1; LEM (Lap2/Emerin/Man1) domain found in lamina-associated polypeptide 2 (LAP2), LEM domain-containing protein 1 (LEMP-1) and similar proteins

pfam08198
Location:2 → 49

Thymopoietin; Thymopoietin protein