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    LOC5505605 DNA-dependent protein kinase catalytic subunit [ Nematostella vectensis (starlet sea anemone) ]

    Gene ID: 5505605, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC5505605
    Gene description
    DNA-dependent protein kinase catalytic subunit
    Locus tag
    NEMVEDRAFT_v1g126375
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nematostella vectensis
    Lineage
    Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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    Genomic context

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    See LOC5505605 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    113
    Annotation release Status Assembly Chr Location
    101 current jaNemVect1.1 (GCF_932526225.1) 12 NC_064045.1 (5486734..5580198, complement)
    100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834183.1 (150776..236409, complement)

    Chromosome 12 - NC_064045.1Genomic Context describing neighboring genes Neighboring gene 4-aminobutyrate aminotransferase, mitochondrial Neighboring gene gamma-glutamyl hydrolase Neighboring gene low-density lipoprotein receptor-related protein 1B Neighboring gene histamine H2 receptor-like Neighboring gene mitochondrial import receptor subunit TOM22 homolog Neighboring gene histidine protein methyltransferase 1 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-dependent protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair via nonhomologous end joining IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intrinsic apoptotic signaling pathway in response to DNA damage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in telomere maintenance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-dependent protein kinase catalytic subunit
    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference jaNemVect1.1

    Genomic

    1. NC_064045.1 Reference jaNemVect1.1

      Range
      5486734..5580198 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_048720238.1 → XP_048576195.1  DNA-dependent protein kinase catalytic subunit isoform X2

    2. XM_048720240.1 → XP_048576197.1  DNA-dependent protein kinase catalytic subunit isoform X4

    3. XM_048720239.1 → XP_048576196.1  DNA-dependent protein kinase catalytic subunit isoform X3

    4. XM_048720237.1 → XP_048576194.1  DNA-dependent protein kinase catalytic subunit isoform X1

    5. XM_048720241.1 → XP_048576198.1  DNA-dependent protein kinase catalytic subunit isoform X5

    6. XM_048720242.1 → XP_048576199.1  DNA-dependent protein kinase catalytic subunit isoform X6

    Nucleotide Protein
    Heading Accession and Version

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