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    zgc:112183 zgc:112183 [ Danio rerio (zebrafish) ]

    Gene ID: 550410, updated on 27-Mar-2024

    Summary

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    Official Symbol
    zgc:112183provided by ZNC
    Official Full Name
    zgc:112183provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050417-216
    See related
    AllianceGenome:ZFIN:ZDB-GENE-050417-216
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable GTP binding activity and GTPase activity. [provided by Alliance of Genome Resources, Apr 2022]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    all
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    Genomic context

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    See zgc:112183 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (60263559..60290436)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (59972458..59982609)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene xylosyltransferase II Neighboring gene ras-related protein Rab-26-like Neighboring gene si:ch211-214b16.3 Neighboring gene SEC14-like protein 1 Neighboring gene si:ch211-214b16.2 Neighboring gene uncharacterized LOC110439307

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Specificity of the zebrafish host transcriptome response to acute and chronic mycobacterial infection and the role of innate and adaptive immune components. van der Sar AM, et al. Mol Immunol, 2009 Jul. PMID 19409617
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC550410

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017715.1 → NP_001017715.1  uncharacterized protein LOC550410

      See identical proteins and their annotated locations for NP_001017715.1

      Status: PREDICTED

      Source sequence(s)
      BC093248
      UniProtKB/TrEMBL
      Q567B0
      Conserved Domains (1) summary
      cd04112
      Location:36 → 226
      Rab26; Rab GTPase family 26 (Rab26)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      60263559..60290436
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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