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    commd5.L COMM domain containing 5 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 446979, updated on 11-Apr-2024

    Summary

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    Official Symbol
    commd5.L
    Official Full Name
    COMM domain containing 5 L homeolog
    Primary source
    Xenbase:XB-GENE-952091
    Locus tag
    XELAEV_18038873mg
    See related
    EnsemblRapid:ENSXLAG00005011150
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    commd5
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    Genomic context

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    See commd5.L in Genome Data Viewer
    Location:
    chromosome: 8L
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (51188363..51198052)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (38023725..38052267)

    Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene homeobox protein ARX Neighboring gene family with sequence similarity 199, X-linked L homeolog Neighboring gene LON peptidase N-terminal domain and ring finger 3 L homeolog Neighboring gene KIAA1210 L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC84249

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    COMM domain containing 5 L homeolog; COMM domain-containing protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      51188363..51198052
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041572759.1 → XP_041428693.1  COMM domain-containing protein 5 isoform X2

      UniProtKB/TrEMBL
      A0A8J1LGK6
      Conserved Domains (1) summary
      cd04753
      Location:80 → 189
      Commd5_HCaRG; COMM_Domain containing protein 5, also called HCaRG (hypertension-related, calcium-regulated gene). HCaRG is a nuclear protein that might be involved in cell proliferation; it is negatively regulated by extracellular calcium concentration, and its basal ...

    2. XM_041572758.1 → XP_041428692.1  COMM domain-containing protein 5 isoform X1

      UniProtKB/TrEMBL
      A0A974C7Y8, Q6DJH0
      Related
      ENSXLAP00005032784.1, ENSXLAT00005033576.1
      Conserved Domains (1) summary
      cd04753
      Location:115 → 224
      Commd5_HCaRG; COMM_Domain containing protein 5, also called HCaRG (hypertension-related, calcium-regulated gene). HCaRG is a nuclear protein that might be involved in cell proliferation; it is negatively regulated by extracellular calcium concentration, and its basal ...

    3. XM_041572760.1 → XP_041428694.1  COMM domain-containing protein 5 isoform X2

      UniProtKB/TrEMBL
      A0A8J1LGK6
      Conserved Domains (1) summary
      cd04753
      Location:80 → 189
      Commd5_HCaRG; COMM_Domain containing protein 5, also called HCaRG (hypertension-related, calcium-regulated gene). HCaRG is a nuclear protein that might be involved in cell proliferation; it is negatively regulated by extracellular calcium concentration, and its basal ...

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001093622.1: Suppressed sequence

      Description
      NM_001093622.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
    Nucleotide Protein Strain
    Heading Accession and Version

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