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    acot2.S acyl-CoA thioesterase 2 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 414573, updated on 11-Apr-2024

    Summary

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    Official Symbol
    acot2.S
    Official Full Name
    acyl-CoA thioesterase 2 S homeolog
    Primary source
    Xenbase:XB-GENE-1011318
    Locus tag
    XELAEV_18041089mg
    See related
    EnsemblRapid:ENSXLAG00005026314
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    acot2
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    Genomic context

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    See acot2.S in Genome Data Viewer
    Location:
    chromosome: 8S
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (5410909..5415560)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (5406843..5411494)

    Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene mitotic deacetylase associated SANT domain protein S homeolog Neighboring gene HEAT repeat containing 4 S homeolog Neighboring gene leukocyte receptor tyrosine kinase S homeolog Neighboring gene RNA polymerase II associated protein 1 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC83099

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables fatty acyl-CoA hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables thiolester hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within acyl-CoA metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within fatty acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    acyl-CoA thioesterase 2 S homeolog
    NP_001084617.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001091148.1 → NP_001084617.1  acyl-CoA thioesterase 2 S homeolog

      See identical proteins and their annotated locations for NP_001084617.1

      Status: PROVISIONAL

      Source sequence(s)
      BC068902
      UniProtKB/TrEMBL
      A0A974H560, Q6NTQ4
      Related
      ENSXLAP00005078192.1, ENSXLAT00005079783.1
      Conserved Domains (4) summary
      COG0657
      Location:96 → 396
      Aes; Acetyl esterase/lipase [Lipid transport and metabolism]
      pfam04775
      Location:33 → 153
      Bile_Hydr_Trans; Acyl-CoA thioester hydrolase/BAAT N-terminal region
      pfam08840
      Location:219 → 428
      BAAT_C; BAAT / Acyl-CoA thioester hydrolase C terminal
      cl21494
      Location:153 → 274
      Abhydrolase; alpha/beta hydrolases

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      5410909..5415560
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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