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    PTSG_00169 CBP-A protein [ Salpingoeca rosetta ]

    Gene ID: 16067438, updated on 25-Jan-2024

    Summary

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    Gene symbol
    PTSG_00169
    Gene description
    CBP-A protein
    Locus tag
    PTSG_00169
    Gene type
    protein coding
    RNA name
    CBP-A protein
    RefSeq status
    PROVISIONAL
    Organism
    Salpingoeca rosetta (strain: ATCC 50818, culture-collection: ATCC:50818)
    Lineage
    Eukaryota; Choanoflagellida; Craspedida; Salpingoecidae; Salpingoeca
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    Genomic context

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    See PTSG_00169 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    20

    NW_004457740.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene cleavage and polyadenylation specificity factor subunit 3 Neighboring gene indigoidine synthase A family protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004457740.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CBP-A protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_004457740.1 Reference assembly

      Range
      789233..802036
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004998663.1 → XP_004998720.1  CBP-A protein [Salpingoeca rosetta]

      See identical proteins and their annotated locations for XP_004998720.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      F2TVQ2
      Conserved Domains (8) summary
      cd15802
      Location:1098 → 1172
      RING_CBP-p300; atypical RING domain found in CREB-binding protein and p300 histone acetyltransferases
      cd15557
      Location:1173 → 1204
      PHD_CBP_p300; PHD finger found in CREB-binding protein (CBP) and histone acetyltransferase p300
      pfam02135
      Location:708 → 767
      zf-TAZ; TAZ zinc finger
      pfam02172
      Location:884 → 957
      KIX; KIX domain
      cl00295
      Location:1584 → 1626
      ZZ; Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have ...
      cl02120
      Location:1278 → 1456
      HAT_KAT11; Histone acetylation protein
      cl02556
      Location:980 → 1086
      Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl02660
      Location:1643 → 1713
      zf-TAZ; TAZ zinc finger
    Protein Accession Links
    GenPept Link UniProtKB Link
    EGD72148.1

    Gene LinkOut

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    Molecular Biology Databases