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    ankhd1 ankyrin repeat and KH domain containing 1 [ Acanthopagrus latus (yellowfin seabream) ]

    Gene ID: 119007117, updated on 21-Mar-2024

    Summary

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    Gene symbol
    ankhd1
    Gene description
    ankyrin repeat and KH domain containing 1
    See related
    EnsemblRapid:ENSALTG00010020031
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acanthopagrus latus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Acanthopagrus
    Orthologs
    zebrafish all
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    Genomic context

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    See ankhd1 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    39
    Annotation release Status Assembly Chr Location
    100 current fAcaLat1.1 (GCF_904848185.1) 18 NC_051056.1 (16409335..16433583)

    Chromosome 18 - NC_051056.1Genomic Context describing neighboring genes Neighboring gene RUN and FYVE domain containing 1 Neighboring gene heterogeneous nuclear ribonucleoprotein H1 Neighboring gene HIG1 hypoxia inducible domain family, member 2A Neighboring gene clathrin, light chain B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_051056.1 Chromosome 18 Reference fAcaLat1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ankyrin repeat and KH domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Acanthopagrus latus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fAcaLat1.1 Primary Assembly

    Genomic

    1. NC_051056.1 Reference fAcaLat1.1 Primary Assembly

      Range
      16409335..16433583
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037076506.1 → XP_036932401.1  ankyrin repeat and KH domain-containing protein 1 isoform X1

      Conserved Domains (10) summary
      smart00248
      Location:1119 → 1147
      ANK; ankyrin repeats
      PHA03095
      Location:207 → 529
      PHA03095; ankyrin-like protein; Provisional
      PHA03247
      Location:2051 → 2508
      PHA03247; large tegument protein UL36; Provisional
      PRK03918
      Location:781 → 873
      PRK03918; DNA double-strand break repair ATPase Rad50
      PRK14950
      Location:692 → 775
      PRK14950; DNA polymerase III subunits gamma and tau; Provisional
      pfam05109
      Location:2026 → 2262
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      sd00045
      Location:402 → 433
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:537 → 627
      Ank_2; Ankyrin repeats (3 copies)
      cd22503
      Location:1797 → 1879
      KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
      cl40437
      Location:1359 → 1511
      TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

    2. XM_037076512.1 → XP_036932407.1  ankyrin repeat and KH domain-containing protein 1 isoform X6

      Conserved Domains (10) summary
      smart00248
      Location:1119 → 1147
      ANK; ankyrin repeats
      PHA03095
      Location:207 → 529
      PHA03095; ankyrin-like protein; Provisional
      PHA03247
      Location:1990 → 2447
      PHA03247; large tegument protein UL36; Provisional
      PRK03918
      Location:781 → 873
      PRK03918; DNA double-strand break repair ATPase Rad50
      PRK14950
      Location:692 → 775
      PRK14950; DNA polymerase III subunits gamma and tau; Provisional
      pfam05109
      Location:1965 → 2201
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      sd00045
      Location:402 → 433
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:537 → 627
      Ank_2; Ankyrin repeats (3 copies)
      cd22503
      Location:1736 → 1818
      KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
      cl40437
      Location:1359 → 1511
      TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

    3. XM_037076508.1 → XP_036932403.1  ankyrin repeat and KH domain-containing protein 1 isoform X3

      Conserved Domains (10) summary
      smart00248
      Location:1117 → 1145
      ANK; ankyrin repeats
      PHA03095
      Location:207 → 529
      PHA03095; ankyrin-like protein; Provisional
      PHA03247
      Location:2049 → 2506
      PHA03247; large tegument protein UL36; Provisional
      PRK03918
      Location:787 → 873
      PRK03918; DNA double-strand break repair ATPase Rad50
      PRK14950
      Location:692 → 775
      PRK14950; DNA polymerase III subunits gamma and tau; Provisional
      pfam05109
      Location:2024 → 2260
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      sd00045
      Location:402 → 433
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:537 → 627
      Ank_2; Ankyrin repeats (3 copies)
      cd22503
      Location:1795 → 1877
      KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
      cl40437
      Location:1357 → 1509
      TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

    4. XM_037076507.1 → XP_036932402.1  ankyrin repeat and KH domain-containing protein 1 isoform X2

      Related
      ENSALTP00010055554.1, ENSALTT00010059870.1
      Conserved Domains (10) summary
      smart00248
      Location:1117 → 1145
      ANK; ankyrin repeats
      PHA03095
      Location:207 → 527
      PHA03095; ankyrin-like protein; Provisional
      PHA03247
      Location:2049 → 2506
      PHA03247; large tegument protein UL36; Provisional
      PRK03918
      Location:779 → 871
      PRK03918; DNA double-strand break repair ATPase Rad50
      PRK14950
      Location:690 → 773
      PRK14950; DNA polymerase III subunits gamma and tau; Provisional
      pfam05109
      Location:2024 → 2260
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      sd00045
      Location:402 → 431
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:535 → 625
      Ank_2; Ankyrin repeats (3 copies)
      cd22503
      Location:1795 → 1877
      KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
      cl40437
      Location:1357 → 1509
      TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

    5. XM_037076510.1 → XP_036932405.1  ankyrin repeat and KH domain-containing protein 1 isoform X4

      Conserved Domains (10) summary
      smart00248
      Location:1114 → 1142
      ANK; ankyrin repeats
      PHA03095
      Location:202 → 524
      PHA03095; ankyrin-like protein; Provisional
      PHA03247
      Location:2046 → 2503
      PHA03247; large tegument protein UL36; Provisional
      PRK03918
      Location:776 → 868
      PRK03918; DNA double-strand break repair ATPase Rad50
      PRK14950
      Location:687 → 770
      PRK14950; DNA polymerase III subunits gamma and tau; Provisional
      pfam05109
      Location:2021 → 2257
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      sd00045
      Location:397 → 428
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:532 → 622
      Ank_2; Ankyrin repeats (3 copies)
      cd22503
      Location:1792 → 1874
      KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
      cl40437
      Location:1354 → 1506
      TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

    6. XM_037076511.1 → XP_036932406.1  ankyrin repeat and KH domain-containing protein 1 isoform X5

      Related
      ENSALTP00010055296.1, ENSALTT00010059611.1
      Conserved Domains (10) summary
      smart00248
      Location:1112 → 1140
      ANK; ankyrin repeats
      PHA03095
      Location:202 → 522
      PHA03095; ankyrin-like protein; Provisional
      PHA03247
      Location:2044 → 2501
      PHA03247; large tegument protein UL36; Provisional
      PRK03918
      Location:774 → 866
      PRK03918; DNA double-strand break repair ATPase Rad50
      PRK14950
      Location:685 → 768
      PRK14950; DNA polymerase III subunits gamma and tau; Provisional
      pfam05109
      Location:2019 → 2255
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      sd00045
      Location:397 → 426
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:530 → 620
      Ank_2; Ankyrin repeats (3 copies)
      cd22503
      Location:1790 → 1872
      KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
      cl40437
      Location:1352 → 1504
      TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)
    Nucleotide Protein
    Heading Accession and Version

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