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    atpaf1 ATP synthase mitochondrial F1 complex assembly factor 1 [ Lates calcarifer (barramundi perch) ]

    Gene ID: 108879609, updated on 10-Apr-2024

    Summary

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    Gene symbol
    atpaf1
    Gene description
    ATP synthase mitochondrial F1 complex assembly factor 1
    See related
    EnsemblRapid:ENSLCAG00010021665
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lates calcarifer
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
    Orthologs
    human zebrafish all
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    Genomic context

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    See atpaf1 in Genome Data Viewer
    Location:
    chromosome: LG17
    Exon count:
    9
    Annotation release Status Assembly LG Location
    RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG17 NC_066849.1 (24917221..24921542, complement)
    100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017367346.1 (1296970..1301286, complement)

    Linkage Group LG17 - NC_066849.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein C1orf226 homolog Neighboring gene tripartite motif-containing protein 65 Neighboring gene MAF bZIP transcription factor Aa Neighboring gene zinc finger CCCH-type containing 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
    2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mitochondrial proton-transporting ATP synthase complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP synthase mitochondrial F1 complex assembly factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TLL_Latcal_v3 Primary Assembly

    Genomic

    1. NC_066849.1 Reference TLL_Latcal_v3 Primary Assembly

      Range
      24917221..24921542 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018670940.2 → XP_018526456.1  ATP synthase mitochondrial F1 complex assembly factor 1

      UniProtKB/TrEMBL
      A0A4W6F8A5, A0A4W6F8B1
      Related
      ENSLCAP00010046736.1, ENSLCAT00010047866.2
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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