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    afap1.L actin filament associated protein 1 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 108698018, updated on 11-Apr-2024

    Summary

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    Official Symbol
    afap1.L
    Official Full Name
    actin filament associated protein 1 L homeolog
    Primary source
    Xenbase:XB-GENE-17343446
    Locus tag
    XELAEV_18005082mg
    See related
    EnsemblRapid:ENSXLAG00005001395
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    afap
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    Genomic context

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    See afap1.L in Genome Data Viewer
    Location:
    chromosome: 1L
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (25343544..25448275)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (16569126..16671692)

    Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene SH3 domain and tetratricopeptide repeats 1 L homeolog Neighboring gene actin binding LIM protein family member 2 L homeolog Neighboring gene sortilin-related VPS10 domain containing receptor 2 L homeolog Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC108698020

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables SH2 domain binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables SH3 domain binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    actin filament-associated protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      25343544..25448275
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018228470.2 → XP_018083959.1  actin filament-associated protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8J0TFR7, A0A974DXF3
      Related
      ENSXLAP00005004253.1, ENSXLAT00005004319.1

    2. XM_018228465.2 → XP_018083954.1  actin filament-associated protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8J0TFR1, A0A974DXF3
      Related
      ENSXLAP00005004251.1, ENSXLAT00005004317.1

    3. XM_018228479.2 → XP_018083968.1  actin filament-associated protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8J0TGL4, A0A974DXF3
      Related
      ENSXLAP00005004252.1, ENSXLAT00005004318.1
    Nucleotide Protein Strain
    Heading Accession and Version

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    Molecular Biology Databases