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    LOC100682872 alpha-1,6-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [ Canis lupus familiaris (dog) ]

    Gene ID: 100682872, updated on 22-Jan-2024

    Summary

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    Gene symbol
    LOC100682872
    Gene description
    alpha-1,6-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like
    See related
    Ensembl:ENSCAFG00845014532
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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    Genomic context

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    See LOC100682872 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 7 NC_051811.1 (201469..218376)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 7 NC_006589.4 (246670..263575)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 7 NC_049228.1 (321745..338654)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 7 NC_049267.1 (189698..206605)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 7 NC_049748.1 (299229..316134)

    Chromosome 7 - NC_051811.1Genomic Context describing neighboring genes Neighboring gene PTPRF interacting protein alpha 4 Neighboring gene transmembrane protein 183A Neighboring gene uncharacterized LOC111096577 Neighboring gene uncharacterized LOC111096575 Neighboring gene MGAT4 family, member F Neighboring gene cytochrome b5 reductase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acetylglucosaminyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein N-linked glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-1,6-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051811.1 Reference ROS_Cfam_1.0

      Range
      201469..218376
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038670677.1 → XP_038526605.1  alpha-1,6-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like isoform X1

      UniProtKB/TrEMBL
      A0A8I3NIF1, A0A8P0PM85
      Related
      ENSCAFP00845020495.1, ENSCAFT00845025997.1
      Conserved Domains (1) summary
      pfam04666
      Location:52 → 318
      Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

    2. XM_038670678.1 → XP_038526606.1  alpha-1,6-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like isoform X2

      UniProtKB/TrEMBL
      A0A8C0Q0W8, A0A8I3NIF1, A0A8P0PM85
      Conserved Domains (1) summary
      pfam04666
      Location:52 → 318
      Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049267.1 Alternate UMICH_Zoey_3.1

      Range
      189698..206605
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038480511.1 → XP_038336439.1  alpha-1,6-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like isoform X1

      Conserved Domains (1) summary
      pfam04666
      Location:52 → 318
      Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

    2. XM_038480512.1 → XP_038336440.1  alpha-1,6-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like isoform X2

      Conserved Domains (1) summary
      pfam04666
      Location:52 → 318
      Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049748.1 Alternate UNSW_CanFamBas_1.0

      Range
      299229..316134
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038605967.1 → XP_038461895.1  alpha-1,6-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like isoform X1

      Conserved Domains (1) summary
      pfam04666
      Location:52 → 318
      Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

    2. XM_038605968.1 → XP_038461896.1  alpha-1,6-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like isoform X2

      Conserved Domains (1) summary
      pfam04666
      Location:52 → 318
      Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049228.1 Alternate UU_Cfam_GSD_1.0

      Range
      321745..338654
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038541838.1 → XP_038397766.1  alpha-1,6-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like isoform X1

      UniProtKB/TrEMBL
      A0A8I3NIF1, A0A8P0PM85
      Conserved Domains (1) summary
      pfam04666
      Location:52 → 318
      Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

    2. XM_038541839.1 → XP_038397767.1  alpha-1,6-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like isoform X2

      UniProtKB/TrEMBL
      A0A8C0Q0W8, A0A8I3NIF1, A0A8P0PM85
      Conserved Domains (1) summary
      pfam04666
      Location:52 → 318
      Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006589.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      246670..263575
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005622162.4 → XP_005622219.1  alpha-1,6-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like isoform X1

      See identical proteins and their annotated locations for XP_005622219.1

      UniProtKB/TrEMBL
      A0A8I3NIF1, A0A8P0PM85
      Conserved Domains (1) summary
      pfam04666
      Location:52 → 318
      Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

    2. XM_005622165.4 → XP_005622222.1  alpha-1,6-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like isoform X2

      UniProtKB/TrEMBL
      A0A8C0Q0W8, A0A8I3NIF1, A0A8P0PM85
      Conserved Domains (1) summary
      pfam04666
      Location:52 → 318
      Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region
    Nucleotide Protein
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