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    TNFRSF17 TNF receptor superfamily member 17 [ Sus scrofa (pig) ]

    Gene ID: 100517087, updated on 8-Mar-2024

    Summary

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    Official Symbol
    TNFRSF17provided by VGNC
    Official Full Name
    TNF receptor superfamily member 17provided by VGNC
    Primary source
    VGNC:VGNC:94261
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in spleen (RPKM 15.5), lung (RPKM 6.6) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See TNFRSF17 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (31137672..31141862, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (32122943..32130379)

    Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110260089 Neighboring gene sorting nexin 29 Neighboring gene uncharacterized LOC100739121 Neighboring gene uncharacterized LOC102166437 Neighboring gene G1 to S phase transition 1 Neighboring gene ribosomal L1 domain containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tumor necrosis factor-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tumor necrosis factor receptor superfamily member 17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

      Range
      31137672..31141862 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021088062.1 → XP_020943721.1  tumor necrosis factor receptor superfamily member 17 isoform X2

      UniProtKB/TrEMBL
      A0A4X1VNY4, A0A8D0WIY3, A0A8D1QNP6
      Conserved Domains (1) summary
      cd13414
      Location:1 → 138
      TNFRSF17; Tumor necrosis factor receptor superfamily member 17 (TNFRSF17), also known as B cell maturation antigen (BCMA), as well as TNFRSF13A

    2. XM_003124587.6 → XP_003124635.1  tumor necrosis factor receptor superfamily member 17 isoform X1

      UniProtKB/TrEMBL
      A0A4X1VNY4, A0A8D0WIY3, A0A8D1QNP6
      Conserved Domains (1) summary
      cd13414
      Location:1 → 159
      TNFRSF17; Tumor necrosis factor receptor superfamily member 17 (TNFRSF17), also known as B cell maturation antigen (BCMA), as well as TNFRSF13A
    Nucleotide Protein
    Heading Accession and Version

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