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    ATP6V1D ATPase H+ transporting V1 subunit D [ Sus scrofa (pig) ]

    Gene ID: 100156681, updated on 8-Mar-2024

    Summary

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    Official Symbol
    ATP6V1Dprovided by VGNC
    Official Full Name
    ATPase H+ transporting V1 subunit Dprovided by VGNC
    Primary source
    VGNC:VGNC:85674
    See related
    Ensembl:ENSSSCG00000033278
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in kidney (RPKM 48.8), ovary (RPKM 41.7) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See ATP6V1D in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (91065998..91084908, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (97375524..97394503, complement)

    Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene golgi associated RAB2 interactor family member 2 Neighboring gene protein associated with LIN7 1, MAGUK p55 family member Neighboring gene eukaryotic translation initiation factor 2 subunit alpha Neighboring gene pleckstrin 2 Neighboring gene uncharacterized LOC102163918

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
    2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of proton-transporting V-type ATPase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V-type proton ATPase subunit D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

      Range
      91065998..91084908 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001928314.6 → XP_001928349.1  V-type proton ATPase subunit D

      UniProtKB/TrEMBL
      A0A286ZJL5, A0A4X1U8Y2, A0A4X1U9K1, A0A8D0U769
      Related
      ENSSSCP00000031648.1, ENSSSCT00000051423.3
      Conserved Domains (1) summary
      pfam01813
      Location:17 → 206
      ATP-synt_D; ATP synthase subunit D
    Nucleotide Protein
    Heading Accession and Version

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