Discovery of 1-(3-(benzyloxy)pyridin-2-yl)-3-(2-(piperazin-1-yl)ethyl)urea: A new modulator for amyloid beta-induced mitochondrial dysfunction

Eur J Med Chem. 2017 Mar 10:128:56-69. doi: 10.1016/j.ejmech.2016.12.057. Epub 2016 Dec 29.

Abstract

Herein, we report a new series of aliphatic substituted pyridyl-urea small molecules synthesized as potential modulators for amyloid beta (Aβ) induced mitochondrial dysfunction. Their blocking activities against Aβ-induced mitochondrial permeability transition pore (mPTP) opening were evaluated by JC-1 assay which measures the change of mitochondrial membrane potential (ΔΨm). The inhibitory activity of sixteen compounds against Aβ-induced mPTP opening was superior or almost similar to that of the standard Cyclosporin A (CsA). Among them, 1-(3-(benzyloxy)pyridin-2-yl)-3-(2-(piperazin-1-yl)ethyl)urea (5x) effectively maintained mitochondrial function and cell viabilities on ATP assay, MTT assay, and ROS assay. Using CDocker algorithm, a molecular docking model presented a plausible binding mode for 5x with cyclophilin D (CypD) receptor as a major component of mPTP. Moreover, hERG and BBB-PAMPA assays presented safe cardiotoxicity and high CNS bioavailability profiles for 5x. Taken as a whole, this report presents compound 5x as a new nonpeptidyl mPTP blocker may hold a promise for further development of Alzheimer's disease (AD) therapeutics.

Keywords: Alzheimer's disease (AD); Mitochondrial permeability transition pore (mPTP); Molecular docking; Pyridyl-urea; β-amyloid peptide (Aβ).

MeSH terms

  • Alzheimer Disease
  • Amyloid beta-Peptides / antagonists & inhibitors
  • Amyloid beta-Peptides / toxicity*
  • Animals
  • Cell Survival / drug effects
  • Cells, Cultured
  • Cyclosporine / pharmacology
  • Drug Discovery
  • Hippocampus / drug effects
  • Hippocampus / pathology*
  • Immunosuppressive Agents / pharmacology
  • Membrane Potential, Mitochondrial / drug effects
  • Mice
  • Mitochondria / drug effects
  • Mitochondria / pathology*
  • Mitochondrial Membrane Transport Proteins / metabolism
  • Molecular Docking Simulation
  • Neurons / drug effects
  • Neurons / pathology*
  • Piperazines / pharmacology*
  • Protein Conformation / drug effects
  • Urea / analogs & derivatives*
  • Urea / pharmacology

Substances

  • 1-(3-(benzyloxy)pyridin-2-yl)-3-(2-(piperazin-1-yl)ethyl)urea
  • Amyloid beta-Peptides
  • Immunosuppressive Agents
  • Mitochondrial Membrane Transport Proteins
  • Piperazines
  • Cyclosporine
  • Urea