Cloning and identification of a novel cDNA which may be associated with FKBP25

Biochem Genet. 2002 Oct;40(9-10):303-10. doi: 10.1023/a:1020256718720.

Abstract

A 1209 bp novel cDNA with a putative open reading frame of 627 bp that has an overlapped fragment of 527 bp with FKBP25 was isolated from a human fetal brain library. Northern Blot analysis detected a signal about 1.5 kb that suggests it is a full-length cDNA. Reverse transcription-PCR demonstrates that the transcripts are high in adult brain, testis, ovary, spleen, and fetal brain. Comparing the cDNA with the human genome database identifies a contig that reveals that the gene contains six exons and is located on human chromosome 20p11. The gene encodes a putative protein with an unknown domain conserved in many species and is similar to bacterial histidyl-tRNA synthetase, and so it is named human histidyl-tRNA-synthetase-related gene.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Chromosomes, Human, Pair 20
  • Cloning, Molecular
  • DNA Primers
  • DNA, Complementary
  • Histidine-tRNA Ligase / chemistry
  • Histidine-tRNA Ligase / genetics*
  • Humans
  • Molecular Sequence Data
  • Open Reading Frames
  • Reverse Transcriptase Polymerase Chain Reaction
  • Sequence Homology, Amino Acid
  • Tacrolimus Binding Proteins / genetics*

Substances

  • DNA Primers
  • DNA, Complementary
  • FKBP3 protein, human
  • Tacrolimus Binding Proteins
  • Histidine-tRNA Ligase

Associated data

  • GENBANK/AF332356