Inference of transposable element ancestry.
PLoS Genet. 2014.
PMID: 25121584
Free PMC article.
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Inference of transposable element ancestry.
PLoS Genet. 2014 Aug 14;10(8):e1004482. doi: 10.1371/journal.pgen.1004482. eCollection 2014 Aug.
PLoS Genet. 2014.
PMID: 25121584
Free PMC article.
Most common methods for inferring transposable element (TE) evolutionary relationships are based on dividing TEs into subfamilies using shared diagnostic nucleotides. ...Studies on selection, functional exaptation, and predictions of horizontal transfer may a …
Most common methods for inferring transposable element (TE) evolutionary relationships are based on dividing TEs into s …
Transposable element invasions.
Mob Genet Elements. 2013 Jan 1;3(1):e23920. doi: 10.4161/mge.23920.
Mob Genet Elements. 2013.
PMID: 23734297
Free PMC article.
Transposable elements have an ongoing, largely parasitic interaction with their hosts. ...Alternatively, we envisaged that elements might have been involved in a burst of amplification, soon after they first occupied a mammalian genome, and the shared ance …
Transposable elements have an ongoing, largely parasitic interaction with their hosts. ...Alternatively, we envisaged that …
The natural selection that shapes our genomes.
Forensic Sci Int Genet. 2019 Mar;39:57-60. doi: 10.1016/j.fsigen.2018.12.003. Epub 2018 Dec 14.
Forensic Sci Int Genet. 2019.
PMID: 30578983
Most of the variation in the human genome (95%) is constrained, directly or indirectly, by purifying selection and GC-biased gene conversion, according to a recent article by Pouyet et al. (2018). The use of 'non-neutral' variation to infer human demographies can lead to u …
Most of the variation in the human genome (95%) is constrained, directly or indirectly, by purifying selection and GC-biased gene conversion …
Stein and Moore Award address. Reconstructing history with amino acid sequences.
Protein Sci. 1992 Feb;1(2):191-200. doi: 10.1002/pro.5560010201.
Protein Sci. 1992.
PMID: 1339026
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Review.
The common strategy is to align amino acid sequences and make inferences about matters of common ancestry. The rate of change of amino acid sequence varies greatly from protein to protein, and this naturally affects how far back a given protein's ancestry can …
The common strategy is to align amino acid sequences and make inferences about matters of common ancestry. The rate of change …
Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution.
Nat Plants. 2019 Jan;5(1):63-73. doi: 10.1038/s41477-018-0337-0. Epub 2019 Jan 9.
Nat Plants. 2019.
PMID: 30626928
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Phylogenomic analysis of 13 representative seed plant genomes indicates that magnoliid and eudicot lineages share more recent common ancestry than monocots. Two whole-genome duplication events were inferred within the magnoliid lineage: one before divergence of Laur …
Phylogenomic analysis of 13 representative seed plant genomes indicates that magnoliid and eudicot lineages share more recent common ance …
In search of polymorphic Alu insertions with restricted geographic distributions.
Genomics. 2007 Jul;90(1):154-8. doi: 10.1016/j.ygeno.2007.03.010. Epub 2007 May 11.
Genomics. 2007.
PMID: 17498924
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Alu elements are transposable elements that have reached over one million copies in the human genome. ...Here, we used a linker-mediated polymerase chain reaction method to preferentially identify low-frequency Alu elements in various human DNA …
Alu elements are transposable elements that have reached over one million copies in the human genome. ...Here, we used …
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