Comparative mapping of distal murine chromosome 11 and human 17q21.3 in a region containing a modifying locus for murine plasma von Willebrand factor level

Genomics. 1998 Nov 15;54(1):19-30. doi: 10.1006/geno.1998.5553.

Abstract

Type 1 von Willebrand disease (VWD) is a common inherited disorder characterized by mild to moderate bleeding and reduced levels of von Willebrand factor (VWF). An animal model for human type 1 VWD, the RIIIS/J mouse strain, exhibits a prolonged bleeding time and reduced plasma VWF levels. We have previously mapped the defect in RIIIS/J to distal mouse Chr 11, distinct from the Vwf locus on Chr 6. This locus, Mvwf, was localized to an approximately 0.5-cM interval, tightly linked to Gip, distal to Ngfr, and proximal to Hoxb. We have now used these genetic markers to construct a contig of yeast and bacterial artificial chromosomes and bacteriophage P1 clones spanning the approximately 300-kb Mvwf nonrecombinant interval. In a comparative mapping approach, mouse homologues of mapped human expressed sequence tags (ESTs) were localized relative to the candidate interval. Twenty-one sequence-tagged sites and ESTs from the corresponding human syntenic region 17q21.3 were ordered using the high-resolution Stanford TNG3 radiation hybrid panel. Based on the resulting radiation hybrid map and our mouse genetic and physical maps, the order of human and mouse genes in a >0.7-cM region appears to be conserved. Six genes localized to the Mvwf nonrecombinant interval by comparative mapping included orthologs of GNGT2, ATP6N1, and a nuclear domain protein. Seven other genes or ESTs were excluded from the candidate interval, including orthologs of PHB, PDK2, a speckle-type protein, and a UDP-galactose transporter. Using exon trapping, 10 additional putative expressed sequences were identified within the Mvwf nonrecombinant interval, including a previously cloned murine glycosyltransferase as well as exons showing sequence similarity to genes for Caenorhabditis elegans and Saccharomyces cerevisiae predicted proteins, an Arabidopsis thaliana ubiquitin-conjugating enzyme, and a Gallus gallus mRNA zipcode-binding protein. Further characterization of these putative genes could identify the dominant mutation responsible for low plasma VWF levels in RIIIS/J mice. These data may also aid in the localization of other disease loci mapped to this region, including the gene for tricho-dento-osseous syndrome and a murine locus for susceptibility to ozone-induced acute lung injury.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Chromosome Mapping*
  • Chromosomes / genetics
  • Chromosomes, Human, Pair 17 / genetics*
  • Disease Models, Animal
  • Exons / genetics
  • Expressed Sequence Tags
  • Genetic Markers
  • Humans
  • Mice
  • Mice, Inbred Strains
  • Molecular Sequence Data
  • Physical Chromosome Mapping
  • Polymerase Chain Reaction / methods
  • Prohibitins
  • RNA / analysis
  • Restriction Mapping
  • Sequence Tagged Sites
  • von Willebrand Diseases / blood
  • von Willebrand Diseases / genetics*
  • von Willebrand Factor / genetics*

Substances

  • Genetic Markers
  • PHB protein, human
  • Prohibitins
  • von Willebrand Factor
  • RNA

Associated data

  • GENBANK/AF067827
  • GENBANK/AF067828
  • GENBANK/AF067829
  • GENBANK/AQ010449
  • GENBANK/AQ010450
  • GENBANK/AQ010451
  • GENBANK/AQ010452
  • GENBANK/AQ010453
  • GENBANK/AQ010454
  • GENBANK/AQ010455
  • GENBANK/AQ010456
  • GENBANK/AQ010457
  • GENBANK/AQ010458
  • GENBANK/AQ010459
  • GENBANK/AQ010460
  • GENBANK/AQ010461
  • GENBANK/AQ010462
  • GENBANK/AQ010463
  • GENBANK/AQ010464
  • GENBANK/AQ010465
  • GENBANK/AQ010466
  • GENBANK/AQ010467
  • GENBANK/G38023
  • GENBANK/G38024
  • GENBANK/G38025
  • GENBANK/G38026
  • GENBANK/G38027
  • GENBANK/G38028
  • GENBANK/G38029
  • GENBANK/G38030