Longitudinal Single-Cell Transcriptomics Reveals a Role for Serpina3n-Mediated Resolution of Inflammation in a Mouse Colitis Model

Cell Mol Gastroenterol Hepatol. 2021;12(2):547-566. doi: 10.1016/j.jcmgh.2021.04.004. Epub 2021 Apr 13.

Abstract

Background & aims: Proper resolution of inflammation is essential to maintaining homeostasis, which is important as a dysregulated inflammatory response has adverse consequences, even being regarded as a hallmark of cancer. However, our picture of dynamic changes during inflammation remains far from comprehensive.

Methods: Here we used single-cell transcriptomics to elucidate changes in distinct cell types and their interactions in a mouse model of chemically induced colitis.

Results: Our analysis highlights the stromal cell population of the colon functions as a hub with dynamically changing roles over time. Importantly, we found that Serpina3n, a serine protease inhibitor, is specifically expressed in stromal cell clusters as inflammation resolves, interacting with a potential target, elastase. Indeed, genetic ablation of the Serpina3n gene delays resolution of induced inflammation. Furthermore, systemic Serpina3n administration promoted the resolution of inflammation, ameliorating colitis symptoms.

Conclusions: This study provides a comprehensive, single-cell understanding of cell-cell interactions during colorectal inflammation and reveals a potential therapeutic target that leverages inflammation resolution.

Keywords: Colitis; Serpina3n; Single Cell RNA-Sequencing; Stromal Cell.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acute-Phase Proteins / metabolism*
  • Animals
  • Cell Communication
  • Colitis / genetics*
  • Colitis / pathology*
  • Colon / pathology
  • Dextran Sulfate
  • Disease Models, Animal
  • Genetic Predisposition to Disease
  • Inflammation / genetics*
  • Inflammation / pathology*
  • Inflammatory Bowel Diseases / genetics
  • Inflammatory Bowel Diseases / pathology
  • Mice
  • Mice, Inbred C57BL
  • Phenotype
  • RNA-Seq
  • Risk Factors
  • Serpins / metabolism*
  • Single-Cell Analysis*
  • Stromal Cells / metabolism
  • Transcriptome / genetics*

Substances

  • Acute-Phase Proteins
  • Serpina3n protein, mouse
  • Serpins
  • Dextran Sulfate