Objective: To investigate the associations between genetically cis-regulated gene expression levels and nonobstructive azoospermia (NOA) susceptibility.
Design: Transcriptome-wide association study (TWAS).
Setting: Medical university.
Interventions: None.
Main outcome measure(s): The cis-hg2 values for each gene were estimated with GCTA software. The effect sizes of cis-single-nucleotide polymorphisms (SNPs) on gene expression were measured using GEMMA software. Gene expression levels were entered into our existing NOA GWAS cohort using GEMMA software. The TWAS P-values were calculated using logistic regression models.
Result(s): Expression levels of 1,296 cis-heritable genes were entered into our existing NOA GWAS data. The TWAS results identified two novel genes as statistically significantly associated with NOA susceptibility: PILRA and ZNF676. In addition, 6p21.32, previously reported in NOA GWAS, was further validated to be a susceptible region to NOA risk.
Conclusion(s): Analysis with TWAS provides fruitful targets for follow-up functional studies.
Keywords: GWAS; NOA; TWAS; susceptibility.
Copyright © 2017 American Society for Reproductive Medicine. Published by Elsevier Inc. All rights reserved.