Crystal structure of the PDZ domain of mouse Dishevelled 1 and its interaction with CXXC5

Biochem Biophys Res Commun. 2017 Apr 8;485(3):584-590. doi: 10.1016/j.bbrc.2016.12.023. Epub 2016 Dec 6.

Abstract

Dishevelled (Dvl) plays a crucial role in Wnt signaling by interacting with membrane-bound receptors and downstream molecules through its PDZ domain. CXXC5 is one of the key molecules that interacts with Dvl and negatively regulates the Wnt/β-catenin pathway in osteoblast differentiation. Recently, the Dvl-CXXC5 interaction has been identified as an excellent target for osteoporosis treatment. Therefore, it is desirable to have detailed structural information for the Dvl-CXXC5 interaction. Although solution structures of the Dvl1 PDZ domain have been reported, a high-resolution crystal structure would provide detailed sidechain information that is essential for drug development. Here, we determined the first crystal structure of the Dvl-1 PDZ domain at a resolution of 1.76 Å, and compared it with its previously reported solution structure. The Dvl1 PDZ domain crystal belonged to the space group H32 with unit-cell parameters a = b = 72.837, c = 120.616, α = β = 90.00, γ = 120.00. The crystal structure of Dvl1 PDZ shared its topology with the previously reported structure determined by nuclear magnetic resonance (NMR); however, the crystal structure was quite different from the solution structure in both the secondary structural region and the ligand-binding pocket. Molecular modeling based on NMR and X-ray crystallographic data yielded detailed information about the Dvl1/CXXC5 interaction, which will be useful for designing inhibitors.

Keywords: CXXC5; Dvl-1; PDZ domain; Wnt signaling; X-ray crystallography.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Binding Sites / genetics
  • Crystallization
  • Crystallography, X-Ray
  • DNA-Binding Proteins
  • Dishevelled Proteins / chemistry*
  • Dishevelled Proteins / genetics
  • Dishevelled Proteins / metabolism
  • Intracellular Signaling Peptides and Proteins / chemistry*
  • Intracellular Signaling Peptides and Proteins / genetics
  • Intracellular Signaling Peptides and Proteins / metabolism
  • Ligands
  • Magnetic Resonance Spectroscopy
  • Mice
  • Models, Molecular
  • PDZ Domains*
  • Peptides / chemistry
  • Peptides / metabolism
  • Protein Binding
  • Protein Structure, Secondary*
  • Sequence Homology, Amino Acid
  • Solutions
  • Transcription Factors
  • Wnt Signaling Pathway

Substances

  • CXXC5 protein, mouse
  • DNA-Binding Proteins
  • Dishevelled Proteins
  • Dvl1 protein, mouse
  • Intracellular Signaling Peptides and Proteins
  • Ligands
  • Peptides
  • Solutions
  • Transcription Factors