Maintenance of Xist Imprinting Depends on Chromatin Condensation State and Rnf12 Dosage in Mice

PLoS Genet. 2016 Oct 27;12(10):e1006375. doi: 10.1371/journal.pgen.1006375. eCollection 2016 Oct.

Abstract

In female mammals, activation of Xist (X-inactive specific transcript) is essential for establishment of X chromosome inactivation. During early embryonic development in mice, paternal Xist is preferentially expressed whereas maternal Xist (Xm-Xist) is silenced. Unlike autosomal imprinted genes, Xist imprinting for Xm-Xist silencing was erased in cloned or parthenogenetic but not fertilized embryos. However, the molecular mechanism underlying the variable nature of Xm-Xist imprinting is poorly understood. Here, we revealed that Xm-Xist silencing depends on chromatin condensation states at the Xist/Tsix genomic region and on Rnf12 expression levels. In early preimplantation, chromatin decondensation via H3K9me3 loss and histone acetylation gain caused Xm-Xist derepression irrespective of embryo type. Although the presence of the paternal genome during pronuclear formation impeded Xm-Xist derepression, Xm-Xist was robustly derepressed when the maternal genome was decondensed before fertilization. Once Xm-Xist was derepressed by chromatin alterations, the derepression was stably maintained and rescued XmXpΔ lethality, indicating that loss of Xm-Xist imprinting was irreversible. In late preimplantation, Oct4 served as a chromatin opener to create transcriptional permissive states at Xm-Xist/Tsix genomic loci. In parthenogenetic embryos, Rnf12 overdose caused Xm-Xist derepression via Xm-Tsix repression; physiological Rnf12 levels were essential for Xm-Xist silencing maintenance in fertilized embryos. Thus, chromatin condensation and fine-tuning of Rnf12 dosage were crucial for Xist imprint maintenance by silencing Xm-Xist.

MeSH terms

  • Animals
  • Blastocyst
  • Chromatin / genetics*
  • Female
  • Gene Dosage
  • Gene Expression Regulation, Developmental
  • Gene Silencing
  • Genomic Imprinting
  • Maternal Inheritance / genetics
  • Mice
  • Octamer Transcription Factor-3 / genetics*
  • Parthenogenesis / genetics
  • Paternal Inheritance / genetics
  • RNA, Long Noncoding / biosynthesis
  • RNA, Long Noncoding / genetics*
  • Ubiquitin-Protein Ligases / biosynthesis
  • Ubiquitin-Protein Ligases / genetics*
  • X Chromosome Inactivation / genetics*

Substances

  • Chromatin
  • Octamer Transcription Factor-3
  • Pou5f1 protein, mouse
  • RNA, Long Noncoding
  • Tsix transcript, mouse
  • XIST non-coding RNA
  • Rlim protein, mouse
  • Ubiquitin-Protein Ligases

Grants and funding

This work was supported by: Ministry of Education, Culture, Sports, Science, and Technology http://www.mext.go.jp/english/a06.htm JSPS KAKENHI Grant-in-Aid for Young Scientists(26861350); a Grant-in-Aid for Scientific Research (21390456) https://www.jsps.go.jp/english/e-grants/; Research Institute for Child Health and Development grant to AF (26-39) http://www.ncchd.go.jp/; and JSP-CREST http://www.jst.go.jp/kisoken/crest/. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.