Identification of DHX33 as a mediator of rRNA synthesis and cell growth

Mol Cell Biol. 2011 Dec;31(23):4676-91. doi: 10.1128/MCB.05832-11. Epub 2011 Sep 19.

Abstract

In this report, we employed a lentiviral RNA interference screen to discover nucleolar DEAD/DEAH-box helicases involved in RNA polymerase I (Pol I)-mediated transcriptional activity. Our screen identified DHX33 as an important modulator of 47S rRNA transcription. We show that DHX33 is a cell cycle-regulated nucleolar protein that associates with ribosomal DNA (rDNA) loci, where it interacts with the RNA Pol I transcription factor upstream binding factor (UBF). DHX33 knockdown decreased the association of Pol I with rDNA and caused a dramatic decrease in levels of rRNA synthesis. Wild-type DHX33 overexpression, but not a DNA binding-defective mutant, enhanced 47S rRNA synthesis by promoting the association of RNA polymerase I with rDNA loci. In addition, an NTPase-defective DHX33 mutant (K94R) acted as a dominant negative mutant, inhibiting endogenous rRNA synthesis. Moreover, DHX33 deficiency in primary human fibroblasts triggered a nucleolar p53 stress response, resulting in an attenuation of proliferation. Thus, we show the mechanistic importance of DHX33 in rRNA transcription and proliferation.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Cell Cycle Checkpoints
  • Cell Nucleolus / metabolism
  • Cell Proliferation*
  • Cells, Cultured
  • Cyclin-Dependent Kinase Inhibitor p21 / genetics
  • Cyclin-Dependent Kinase Inhibitor p21 / metabolism
  • DEAD-box RNA Helicases / genetics
  • DEAD-box RNA Helicases / metabolism*
  • Gene Knockdown Techniques
  • Humans
  • Mice
  • Mutation, Missense
  • Nucleolus Organizer Region / metabolism
  • Pol1 Transcription Initiation Complex Proteins / metabolism
  • Primary Cell Culture
  • Protein Binding
  • Protein Subunits / metabolism
  • RNA Interference
  • RNA Polymerase I / metabolism
  • RNA, Ribosomal / biosynthesis*
  • RNA, Ribosomal / genetics
  • Transcription, Genetic
  • Tumor Suppressor Protein p53 / genetics
  • Tumor Suppressor Protein p53 / metabolism

Substances

  • Cyclin-Dependent Kinase Inhibitor p21
  • Pol1 Transcription Initiation Complex Proteins
  • Protein Subunits
  • RNA, Ribosomal
  • TP53 protein, human
  • Tumor Suppressor Protein p53
  • transcription factor UBF
  • RNA Polymerase I
  • DHX33 protein, human
  • DEAD-box RNA Helicases