Submitted SNP(ss) Details: ss23345647

Submitted SNP(ss) Details: ss23345647

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd0569031
RefSNP(rs#)	rs3173615
Submitted Batch ID	AFD_AFR_18-MAY-2004
Submitted Date	Aug 20, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000007.8
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	46
Population	AFD_AFR_PANEL

Allele
Observed Allele	C/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 ATAACAAACA ATAACTATTA CTCTGTCGAA GTTGAAAACA TCACTGCCCA AGTTCAATTT
 TCAAAAACAG TTATTGGAAA GGCACGCT
 TAAACAACAT AA
 S
 CATTATTGGT CC
 ACTTGATATG AAACAAGTAA GAATCAATCA TGAAATACTT TGTAAGAGTT AAATGAATGT
 CAGCTTTGTA TATCATATAA CTTGAAGG

Submitted Frequency for ss23345647

There is no frequency submission for ss23345647.

dbSNP summary of Genotypes for ss23345647

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	44	44	C=0.75000000	G=0.25000000	C/C=0.54545456 C/G=0.40909091 G/G=0.04545455	Pr(chiSq=0.182,df=1) =0.752	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	46	46	G=0.67391306	C=0.32608697	G/G=0.47826087 C/G=0.39130434 C/C=0.13043478	Pr(chiSq=0.277,df=1) =0.655	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	48	48	G=0.70833331	C=0.29166666	G/G=0.50000000 C/G=0.41666666 C/C=0.08333334	Pr(chiSq=0.002,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss23345647

There is no individual genotype data for ss23345647.

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