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Submitted SNP(ss) Details: ss2089196           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0800039
RefSNP(rs#)rs1575012
Submitted Batch ID001018_25
Submitted DateOct 19, 2000
Publication CitedN.D.
First entry to dbSNPOct 19 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC-SANGER-19-26
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 18
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2089196|allelePos=332|len=543|taxid=9606|alleles='G/T'|mol=Genomic
 AGGACAAAAC CCCCAGAAAG GCAATCACTT TGCAAGTCAG AGTCCCATAA GTCCAGGTAG
 AGCCATTTTT GACAGAGTTG AACACAAATG GGAAACAAAT TGCAGATCTG AGGATATCTG
 AACAGCAAAG ATCCAACAGG AAGTAGTAAG GTGCTCTATG CAAGGTCTTA TCTTTCACTA
 GCAAAATGGA GATCAGGAGG TTGCCCACCA CGCTGACTCC TATTATGAAA CCCAAGGAAG
 TCAGTTTCAG AAAGGCTGTT AGAGGCGAGA GATTTTGCAA AATGTTGTCA GCTGCATGGC
 TATAGTTCGC CATAGATGGA TGGAGGATAA G
 K
 ATACAGCCTC AGTCAAGTCT CATGATCTAG ATATAAGAAC AAGGAAAAGA TAGATCCATA
 CATTTTACTG AAAATATAAT CCACAAAGAG AACTGATCTG ATCTGCAGTC ATGCTTCCTC
 TTTTCTTCCA CTTGTTTTGC CATCAGAATA TCTGAAAAAA AAAAAAAAAA AAACCTATCA
 GTTCTTAAGT TAACAAGCAA TGATGTCAGA C

  Submitted Frequency for ss2089196 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CEPH
MULTI-NATIONAL
184G=0.64999998
T=0.34999999
0.455 +/-0.0301_2004SEQUENOM


  dbSNP summary of Genotypes for ss2089196 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AfAm3838G=0.84210527
T=0.15789473G/G=0.68421054
G/T=0.31578946
Pr(chiSq=0.194,df=1)
=0.752
Genotype
Freq.
Caucasian3434G=0.70588237
T=0.29411766G/G=0.52941179
G/T=0.35294119
T/T=0.11764706
Pr(chiSq=0.382,df=1)
=0.584
Genotype
Freq.
Asian4040G=0.97500002
T=0.02500000G/G=0.94999999
G/T=0.05000000
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
CEPH4444G=0.77272725
T=0.22727273G/G=0.59090906
G/T=0.36363637
T/T=0.04545455
Pr(chiSq=0.027,df=1)
=1.000
Genotype
Freq.
PDpanel4646G=0.84782606
T=0.15217391G/G=0.69565219
G/T=0.30434781
Pr(chiSq=0.208,df=1)
=0.655
Genotype
Freq.
HapMap-CEU226226G=0.73451328
T=0.26548672G/G=0.53097343
G/T=0.40707964
T/T=0.06194690
Pr(chiSq=0.217,df=1)
=0.655
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686G=0.97674417
T=0.02325581G/G=0.95348835
G/T=0.04651163
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
HapMap-JPT172172G=0.97674417
T=0.02325581G/G=0.95348835
G/T=0.04651163
Pr(chiSq=0.002,df=1)
=1.000
Genotype
Freq.
HapMap-YRI226226G=0.76106197
T=0.23893805G/G=0.58407080
G/T=0.35398230
T/T=0.06194690
Pr(chiSq=0.081,df=1)
=1.000
Genotype
Freq.
HAPMAP-ASW9898G=0.83673471
T=0.16326530G/G=0.71428573
G/T=0.24489796
T/T=0.04081633
Pr(chiSq=0.527,df=1)
=0.479
Genotype
Freq.
HAPMAP-CHD170170G=0.96470588
T=0.03529412G/G=0.92941177
G/T=0.07058824
Pr(chiSq=0.008,df=1)
=1.000
Genotype
Freq.
HAPMAP-GIH176176G=0.72159094
T=0.27840909G/G=0.50000000
G/T=0.44318181
T/T=0.05681818
Pr(chiSq=0.934,df=1)
=0.343
Genotype
Freq.
HAPMAP-LWK180180G=0.78333336
T=0.21666667G/G=0.58888888
G/T=0.38888890
T/T=0.02222222
Pr(chiSq=1.910,df=1)
=0.200
Genotype
Freq.
HAPMAP-MEX100100G=0.83999997
T=0.16000000G/G=0.69999999
G/T=0.28000000
T/T=0.02000000
Pr(chiSq=0.087,df=1)
=1.000
Genotype
Freq.
HAPMAP-MKK284284G=0.76760566
T=0.23239437G/G=0.59154928
G/T=0.35211268
T/T=0.05633803
Pr(chiSq=0.024,df=1)
=1.000
Genotype
Freq.
HAPMAP-TSI176176G=0.71022725
T=0.28977272G/G=0.48863637
G/T=0.44318181
T/T=0.06818182
Pr(chiSq=0.518,df=1)
=0.479
Genotype
Freq.

  Submitted individual genotype for ss2089196 back to top
There is no individual genotype data for ss2089196.

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