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Submitted SNP(ss) Details: ss2089194           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0800035
RefSNP(rs#)rs1320760
Submitted Batch ID001018_25
Submitted DateOct 19, 2000
Publication CitedN.D.
First entry to dbSNPOct 19 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC-SANGER-19-26
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2089194|allelePos=139|len=636|taxid=9606|alleles='A/G'|mol=Genomic
 ATGTTGGTAA TAATACTTTT GGAATTATAT GCCACCGTTT TGTTAATGAA TTGAAATAAT
 TTTATCTTTT GGGTGGTAGT TATTCTCATA ATAAGCTCAA GAGACATTTA AATTCATTCA
 CATGTTTAAA ATTATTTG
 R
 TATCTTCCCT TAGGTATCAC AAAGCTTAAT ATTAAGAACT AAAGTGAAAT GAAATTGTAT
 TACATCTAAA TTTATAGACA ATTTCTTTTC TCAGCATAAT TGAGCAGAAA AAGTAAACTT
 TTGAGATTAG GAACTTTCCT GCATACTTTG AAAAATTTAG AAAAATGATT GACATTTTGC
 AAATTTCAAG GTTTACTAAA TTGACCAGAA TTTTTACTGG AATGTTAAAC TAGCCTATCA
 TTAGAAAGTA TACCTATTAT GTGCTTTTTT TTTTTAAGTA GTCAGAAAGA AAACATTTAG
 AATAAATATT TTAGGCACAG TCATAATATG TAAAAATGTA ATCTGGAAGA TGCTCTACAA
 AGTAAATTCT TAGAGTGACT CATTCTCTAT AACTATTCTA CAGTAACTTT TTCTAAATAA
 AGGACTATTT TGAAGTGAGA ATCTACATCA CAAGAGAGAA AATAAAAGCT TCTGGACTTA
 GGAAAGCACA TTTAGTC

  Submitted Frequency for ss2089194 back to top
There is no frequency submission for ss2089194.


  dbSNP summary of Genotypes for ss2089194 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120A=0.97500002
G=0.02500000A/A=0.94999999
A/G=0.05000000
Pr(chiSq=0.002,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090A=0.67777777
G=0.32222223A/A=0.48888889
A/G=0.37777779
G/G=0.13333334
Pr(chiSq=0.821,df=1)
=0.371
Genotype
Freq.
HapMap-JPT8686A=0.77906978
G=0.22093023A/A=0.58139533
A/G=0.39534885
G/G=0.02325581
Pr(chiSq=0.948,df=1)
=0.343
Genotype
Freq.
HapMap-YRI120120A=0.54166669
G=0.45833334A/G=0.41666666
A/A=0.33333334
G/G=0.25000000
Pr(chiSq=1.552,df=1)
=0.251
Genotype
Freq.

  Submitted individual genotype for ss2089194 back to top
There is no individual genotype data for ss2089194.

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