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Submitted SNP(ss) Details: ss2089192           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0800029
RefSNP(rs#)rs1306161
Submitted Batch ID001018_25
Submitted DateOct 19, 2000
Publication CitedN.D.
First entry to dbSNPOct 19 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTSC-SANGER-19-26
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2089192|allelePos=217|len=587|taxid=9606|alleles='A/G'|mol=Genomic
 TAAAactcag caccatccca gctatagggg ctatggagaa aaaccctttc tacttgagaa
 aagcagagga aaaagtaaag gggactttgt cactggttta gccacagggg gctagagaac
 caagcaggtc cttggggtct ttgagtccag gctttggctc ttcgatggca tttctggatc
 tatcctgggc caaacgagag tccactgccc tgaaaa
 R
 taagtcctat cctaggcagc atttaccgca agtagactaa agagcccttt ggccttaagg
 aaatactttc agtatcctgg aatactccct gtgggccgtg gtggtagtgg tcacagattg
 aggctcctct gcctgtggaa aatgggggga agaggggata gaactgcatc tcgtggtttg
 aatgccagca aagccacagt acaatagaac accaggtaga cttctaagga ttttactcta
 gtccctggct actgaatggc acctctggac ttggcagggg cctgtgggaa gtctgtgccc
 tgaggggaaa gacacaggcc tggctggctt tctcacctgc tggttataga gccccaaggc
 cttgagAAAA

  Submitted Frequency for ss2089192 back to top
There is no frequency submission for ss2089192.


  dbSNP summary of Genotypes for ss2089192 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
Caucasian2222A=0.95454544
G=0.04545455A/A=0.90909094
A/G=0.09090909
Pr(chiSq=0.002,df=1)
=1.000		Genotype
Freq.
PDpanel4040A=0.97500002
G=0.02500000A/A=0.94999999
A/G=0.05000000
Pr(chiSq=0.001,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss2089192 back to top
There is no individual genotype data for ss2089192.

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